Strain identifier

BacDive ID: 140289

Type strain: Yes

Species: Naumannella huperziae

Strain history: <- X.-Q. Zhang, Chinese Acad. Sci. (CAS), Beijing; CPCC 204135 <- Hong Min Sun

NCBI tax ID(s): 1730526 (species)

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General

@ref: 42896

BacDive-ID: 140289

DSM-Number: 101717

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped, colony-forming

description: Naumannella huperziae DSM 101717 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from surface-sterilized medicinal plant, Huperzia serrata.

NCBI tax id

  • NCBI tax id: 1730526
  • Matching level: species

strain history

  • @ref: 42896
  • history: <- X.-Q. Zhang, Chinese Acad. Sci. (CAS), Beijing; CPCC 204135 <- Hong Min Sun

doi: 10.13145/bacdive140289.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Naumannella
  • species: Naumannella huperziae
  • full scientific name: Naumannella huperziae Sun et al. 2017

@ref: 42896

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Propionibacteriaceae

genus: Naumannella

species: Naumannella huperziae

full scientific name: Naumannella huperziae Sun et al. 2017

type strain: yes

Morphology

cell morphology

  • @ref: 43247
  • gram stain: positive
  • cell length: 0.9-1.2 µm
  • cell width: 0.4-0.6 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 43247
  • colony color: pale yellow to grey-black
  • colony shape: circular
  • medium used: DSMZ 92 medium

pigmentation

  • @ref: 43247
  • production: no
  • name: diffusible pigments

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43247DSMZ 92 mediumyes
42896TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43247positiveoptimum28-32mesophilic
43247positivegrowth20-37
42896positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
43247positivegrowth6.0-9.0alkaliphile
43247positiveoptimum7.0-8.0

Physiology and metabolism

oxygen tolerance

  • @ref: 43247
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43247
  • type of spore: spore
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43247NaClpositivegrowth0-9 %(w/v)
43247NaClpositiveoptimum0-3 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4324728017starch+hydrolysis
4324753423tween 40+hydrolysis
432475291gelatin+hydrolysis
43247milk+hydrolysis
4324716199urea+hydrolysis
4324762968cellulose-hydrolysis
4324723652dextrin+carbon source
4324717306maltose+carbon source
4324718333D-arabitol+carbon source
4324727082trehalose+carbon source
4324717057cellobiose+carbon source
4324732528turanose+carbon source
4324729990D-aspartate+carbon source
4324716024D-mannose+carbon source
4324774611methyl (R)-lactate+carbon source
4324718024D-galacturonic acid+carbon source
432478391D-gluconate+carbon source
4324715748D-glucuronate+carbon source
4324714314D-glucose 6-phosphate+carbon source
4324733801D-saccharate+carbon source
4324778697D-fructose 6-phosphate+carbon source
4324715824D-fructose+carbon source
4324728847D-fucose+carbon source
4324712936D-galactose+carbon source
4324715588D-malate+carbon source
4324728066gentiobiose+carbon source
4324717754glycerol+carbon source
432475291gelatin+carbon source
4324732323glucuronamide+carbon source
4324717992sucrose+carbon source
4324717164stachyose+carbon source
43247506227N-acetylglucosamine+carbon source
4324717925alpha-D-glucose+carbon source
43247309162-oxoglutarate+carbon source
4324717716lactose+carbon source
43247739183-O-methyl-D-glucose+carbon source
4324717268myo-inositol+carbon source
4324716977L-alanine+carbon source
4324716467L-arginine+carbon source
4324729991L-aspartate+carbon source
4324718287L-fucose+carbon source
4324762345L-rhamnose+carbon source
4324715589L-malate+carbon source
4324729985L-glutamate+carbon source
4324715971L-histidine+carbon source
4324718183L-pyroglutamic acid+carbon source
4324717115L-serine+carbon source
4324717309pectin+carbon source
4324726490quinate+carbon source
4324753423tween 40+carbon source
4324713705acetoacetate+carbon source
4324716537galactarate+carbon source
4324730849L-arabinose+carbon source
4324716651(S)-lactate-carbon source
4324717924D-sorbitol-carbon source
4324717634D-glucose+carbon source
4324717814salicin+/-carbon source
4324743943methyl alpha-D-mannoside+builds acid from
43247320061methyl alpha-D-glucopyranoside+/-builds acid from
4324716813galactitol+builds acid from
4324732323glucuronamide+builds acid from
4324728066gentiobiose+builds acid from
4324715443inulin-builds acid from
4324717814salicin+/-builds acid from
4324730849L-arabinose+/-builds acid from
4324717716lactose+builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
4324716136hydrogen sulfideno
4324735581indoleno

enzymes

@refvalueactivityec
43247catalase+1.11.1.6
43247cytochrome oxidase-1.9.3.1
43247acid phosphatase+3.1.3.2
43247alkaline phosphatase+3.1.3.1
43247cystine arylamidase+3.4.11.3
43247esterase (C 4)+
43247esterase Lipase (C 8)+
43247alpha-mannosidase+3.2.1.24
43247alpha-glucosidase+3.2.1.20
43247alpha-chymotrypsin+3.4.21.1
43247beta-galactosidase+3.2.1.23
43247beta-glucosidase+3.2.1.21
43247valine arylamidase+
43247trypsin+3.4.21.4
43247N-acetyl-beta-glucosaminidase+3.2.1.52
43247alpha-galactosidase+3.2.1.22
43247leucine arylamidase+3.4.11.1
43247naphthol-AS-BI-phosphohydrolase+/-

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentlatitudelongitude
42896surface-sterilized medicinal plant, Huperzia serrataHuperzia serrataSichuan province, Hongya County (29° 41' 24.98'' N 103° 10' 16.23'' E, 1187 m above sea level)ChinaCHNAsia29.6903103.171
43247surface-sterilized medicinal plant, Huperzia serrata (Thunb.)Hongya County of Sichuan Province, south-west ChinaChinaCHNAsia29103

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Shrub (Scrub)
#Host Body-Site#Plant#Sterilized plant part

taxonmaps

  • @ref: 69479
  • File name: preview.99_20049.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_72;96_10225;97_12335;98_15162;99_20049&stattab=map
  • Last taxonomy: Naumannella
  • 16S sequence: KR184192
  • Sequence Identity:
  • Total samples: 1338
  • soil counts: 288
  • aquatic counts: 264
  • animal counts: 744
  • plant counts: 42

Safety information

risk assessment

  • @ref: 42896
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 42896
  • description: Naumannella huperziae strain CPCC 204135 16S ribosomal RNA gene, partial sequence
  • accession: KR184192
  • length: 1511
  • database: ena
  • NCBI tax ID: 1730526

GC content

  • @ref: 42896
  • GC-content: 71.8
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 42896

culture collection no.: DSM 101717, NBRC 111773, CPCC 204135

straininfo link

  • @ref: 96595
  • straininfo: 400179

literature

  • topic: Phylogeny
  • Pubmed-ID: 28629493
  • title: Naumannella huperziae sp. nov., an endophytic actinobacterium isolated from Huperzia serrata (Thunb.).
  • authors: Sun Y, Chen HH, Sun HM, Ai MJ, Su J, Yu LY, Zhang YQ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001882
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, Huperzia/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plants, Medicinal/microbiology, Propionibacteriaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42896Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101717Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101717)
43247Ye Sun, Hua-Hong Chen, Hong-Min Sun, Meng-Jie Ai, Jing Su, Li-Yan Yu and Yu-Qin ZhangNaumannella huperziae sp. nov., an endophytic actinobacterium isolated from Huperzia serrata (Thunb.)10.1099/ijsem.0.001882IJSEM 67: 1867-1872 201728629493
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96595Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400179.1