Strain identifier

BacDive ID: 140285

Type strain: Yes

Species: Rubricella aquisinus

Strain Designation: J82

Culture col. no.: DSM 103377, CCTCC AB 2016170

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 5.0 (current version):
version 4.1:
version 4.0:
version 3.0:
version 5.0 (current version)

General

@ref: 42892

BacDive-ID: 140285

DSM-Number: 103377

keywords: 16S sequence, genome sequence, Bacteria, mesophilic

description: Rubricella aquisinus J82 is a mesophilic bacterium that was isolated from seawater.

strain history: <- L. Yang, Qingdao Institute of Bioenergy & Bioprocess Technology, Chinese Academy of Sciences (CAS), Qingdao; J82 <- L. Tang; J82

doi: 10.13145/bacdive140285.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Rhodobacteraceae
  • genus: Rubricella
  • species: Rubricella aquisinus
  • full scientific name: Rubricella aquisinus Yang et al. 2017

@ref: 42892

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Rubricella

species: Rubricella aquisinus

full scientific name: Rubricella aquisinus Yang et al. 2017

strain designation: J82

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 42892
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf

culture temp

  • @ref: 42892
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 42892
  • sample type: seawater
  • geographic location: Qingdao, coast of Yellow Sea, Jiaozhou Bay
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

  • @ref: 42892
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 42892
  • description: Rubricella aquisinus strain J82 16S ribosomal RNA gene, partial sequence
  • accession: KX082663
  • length: 1416
  • database: ena
  • NCBI tax ID: 2028108

Genome sequences

  • @ref: 66792
  • description: Rubricella aquisinus DSM 103377
  • accession: 2828464391
  • assembly level: permanent
  • database: img
  • NCBI tax ID: 2028108

GC content

  • @ref: 42892
  • GC-content: 57.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 42892

culture collection no.: DSM 103377, CCTCC AB 2016170

Reference

@idauthorstitledoi/urlcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
42892Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103377Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103377)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes