Name: Rubricella aquisinus J82
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140285

Type strain:

Species: Rubricella aquisinus

Strain Designation: J82

Culture col. no.: DSM 103377, CCTCC AB 2016170

Strain history: <- L. Yang, Qingdao Institute of Bioenergy & Bioprocess Technology, Chinese Academy of Sciences (CAS), Qingdao; J82 <- L. Tang; J82

NCBI tax ID(s): 2028108 (species)

SI-ID 402844

DSM 103377

Section

Rubricella aquisinus J82 is a mesophilic, Gram-negative bacterium that was isolated from seawater.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Rubricella*
	Species	**Rubricella aquisinus**
	Full Scientific Name (LPSN)	Rubricella aquisinus Yang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42892]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #42892]

Culture medium growth

[Ref.: #42892]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42892]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42892]			growth	30 °C

[Ref.: #42892]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42892]	Sample type/isolated from	seawater
[Ref.: #42892]	Geographic location (country and/or sea, region)	Qingdao, coast of Yellow Sea, Jiaozhou Bay
[Ref.: #42892]	Country	China
[Ref.: #42892]	Country ISO 3 Code	CHN
[Ref.: #42892]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42892]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42892]	Rubricella aquisinus strain J82 16S ribosomal RNA gene, partial sequence	KX082663	1416	ENA	2028108 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rubricella aquisinus DSM 103377	GCA_014199445	scaffold	GenBank	2028108 tax ID	*
[Ref.: #66792]	Rubricella aquisinus strain DSM 103377	2028108.3	wgs	PATRIC	2028108 tax ID	*
[Ref.: #66792]	Rubricella aquisinus DSM 103377	2828464391	draft	JGI IMG/M	2028108 tax ID	*

[Ref.: #42892]

GC-content

57.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rubricella aquisinus DSM 103377 NCBI: GCA_014199445.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rubricella aquisinus DSM 103377 NCBI: GCA_014199445.1
[Ref.: #69480]	flagellated	no	76.181	no
[Ref.: #69480]	gram-positive	no	98.618	no
[Ref.: #69480]	anaerobic	no	97.884	no
[Ref.: #69480]	aerobic	yes	87.758	no
[Ref.: #69480]	halophile	yes	68.121	no
[Ref.: #69480]	spore-forming	no	94.782	no
[Ref.: #69480]	glucose-util	yes	67.971	no
[Ref.: #69480]	thermophile	no	92.876	yes
[Ref.: #69480]	motile	yes	60.343	no
[Ref.: #69480]	glucose-ferment	no	90.246	no

Availability in culture collections External links

[Ref.: #42892]

Culture collection no.

DSM 103377, CCTCC AB 2016170

[Ref.: #96591]

SI-ID 402844

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rubricella aquisinus gen. nov., sp. nov., a novel member of the family Rhodobacteraceae.	Yang LQ, Tang L, Liu L, Salam N, Li WJ, Liu X, Jin G, Jiao N, Zhang Y	Antonie Van Leeuwenhoek	10.1007/s10482-016-0803-5	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42892

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103377

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96591

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402844.1 )

* These data were automatically processed and therefore are not curated

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Rubricella aquisinus DSM 103377

Rubricella aquisinus DSM 103377

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