Strain identifier
BacDive ID: 140259
Type strain: 
Species: Helicobacter ailurogastricus
Strain Designation: ASB7
Strain history: <- M. Joosten, Univ. Ghent, Belgium; ASB7 <- Fac. Veterinary Medicine, Univ. Ghent, Merelbeke, Belgium
NCBI tax ID(s): 1578720 (species)
General
@ref: 42866
BacDive-ID: 140259
DSM-Number: 100489
keywords: genome sequence, Bacteria, mesophilic, motile
description: Helicobacter ailurogastricus ASB7 is a mesophilic, motile bacterium that was isolated from gastric mucosae of a stray cat.
NCBI tax id
- NCBI tax id: 1578720
- Matching level: species
strain history
- @ref: 42866
- history: <- M. Joosten, Univ. Ghent, Belgium; ASB7 <- Fac. Veterinary Medicine, Univ. Ghent, Merelbeke, Belgium
doi: 10.13145/bacdive140259.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Helicobacteraceae
- genus: Helicobacter
- species: Helicobacter ailurogastricus
- full scientific name: Helicobacter ailurogastricus Joosten et al. 2017
@ref: 42866
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Helicobacteraceae
genus: Helicobacter
species: Helicobacter ailurogastricus
full scientific name: Helicobacter ailurogastricus Joosten et al. 2017
strain designation: ASB7
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 94.325 | |
| 69480 | 99.999 | negative |
Culture and growth conditions
culture medium
- @ref: 42866
- name: HELICOBACTER MEDIUM (DSMZ Medium 1279)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1279
- composition: Name: HELICOBACTER MEDIUM (DSMZ Medium 1279) Composition: Brucella Broth 35.0 g/l Skirrow supplement Vitox Fetal bovine serum Demineralized water Amphotericin
culture temp
- @ref: 42866
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.999 |
Isolation, sampling and environmental information
isolation
- @ref: 42866
- sample type: gastric mucosae of a stray cat
- geographic location: Merelbeke
- country: Belgium
- origin.country: BEL
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Felidae (Cat) |
| #Host Body-Site | #Gastrointestinal tract | |
| #Infection | #Disease | #Mycosis |
Sequence information
Genome sequences
- @ref: 66792
- description: Helicobacter ailurogastricus ASB7
- accession: GCA_001282945
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1578720
GC content
- @ref: 42866
- GC-content: 37.34
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 89.694 | no |
| flagellated | no | 62.4 | no |
| gram-positive | no | 99.263 | no |
| anaerobic | no | 89.823 | no |
| halophile | no | 86.242 | no |
| spore-forming | no | 96.743 | no |
| glucose-util | no | 64.565 | no |
| aerobic | no | 95.964 | no |
| thermophile | no | 50 | yes |
| glucose-ferment | no | 80.773 | no |
External links
@ref: 42866
culture collection no.: DSM 100489, LMG 28648
straininfo link
- @ref: 96566
- straininfo: 404221
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42866 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100489 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100489) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 96566 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404221.1 |