Strain identifier
BacDive ID: 140258
Type strain: 
Species: Helicobacter ailurogastricus
Strain Designation: ASB11
Strain history: <- M. Joosten, Univ. Ghent, Belgium; ASB11 <- Fac. Veterinary Medicine, Univ. Ghent
NCBI tax ID(s): 1578720 (species)
General
@ref: 42865
BacDive-ID: 140258
DSM-Number: 29989
keywords: genome sequence, Bacteria, mesophilic
description: Helicobacter ailurogastricus ASB11 is a mesophilic bacterium that was isolated from gastric mucosa of stray cat.
NCBI tax id
- NCBI tax id: 1578720
- Matching level: species
strain history
- @ref: 42865
- history: <- M. Joosten, Univ. Ghent, Belgium; ASB11 <- Fac. Veterinary Medicine, Univ. Ghent
doi: 10.13145/bacdive140258.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Helicobacteraceae
- genus: Helicobacter
- species: Helicobacter ailurogastricus
- full scientific name: Helicobacter ailurogastricus Joosten et al. 2017
@ref: 42865
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Helicobacteraceae
genus: Helicobacter
species: Helicobacter ailurogastricus
full scientific name: Helicobacter ailurogastricus Joosten et al. 2017
strain designation: ASB11
type strain: no
Culture and growth conditions
culture medium
- @ref: 42865
- name: HELICOBACTER MEDIUM (DSMZ Medium 1279)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1279
- composition: Name: HELICOBACTER MEDIUM (DSMZ Medium 1279) Composition: Brucella Broth 35.0 g/l Skirrow supplement Vitox Fetal bovine serum Demineralized water Amphotericin
culture temp
- @ref: 42865
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 42865
- sample type: gastric mucosa of stray cat
- geographic location: Merelbeke
- country: Belgium
- origin.country: BEL
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Felidae (Cat) |
| #Host Body-Site | #Gastrointestinal tract | |
| #Infection | #Disease | #Mycosis |
Sequence information
Genome sequences
- @ref: 66792
- description: Helicobacter ailurogastricus ASB11
- accession: GCA_001283025
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1578720
GC content
- @ref: 42865
- GC-content: 37.38
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 89.681 | no |
| flagellated | no | 62.089 | no |
| gram-positive | no | 99.276 | no |
| anaerobic | no | 89.154 | no |
| aerobic | no | 96.471 | no |
| halophile | no | 85.704 | no |
| spore-forming | no | 96.83 | no |
| glucose-util | no | 66.297 | no |
| thermophile | no | 56.139 | no |
| glucose-ferment | no | 81.733 | no |
External links
@ref: 42865
culture collection no.: DSM 29989
straininfo link
- @ref: 96565
- straininfo: 404357
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42865 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29989 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29989) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 96565 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404357.1 |