Strain identifier
BacDive ID: 140136
Type strain: 
Species: Tetrasphaera sp.
Strain Designation: YC 6726
Strain history: <- Y. R. Chung, Gyeongsang Natl. Univ. (GNU), Jinju, Korea; YC 6726 <- Z. Aslam
NCBI tax ID(s): 1917966 (species)
version 9 (current version)
General
@ref: 42743
BacDive-ID: 140136
DSM-Number: 21413
keywords: 16S sequence, Bacteria
description: Tetrasphaera sp. YC 6726 is a bacterium that was isolated from rice field under tillage.
NCBI tax id
- NCBI tax id: 1917966
- Matching level: species
strain history
- @ref: 42743
- history: <- Y. R. Chung, Gyeongsang Natl. Univ. (GNU), Jinju, Korea; YC 6726 <- Z. Aslam
doi: 10.13145/bacdive140136.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Intrasporangiaceae
- genus: Tetrasphaera
- species: Tetrasphaera sp.
- full scientific name: Tetrasphaera Maszenan et al. 2000
synonyms
@ref synonym 20215 Nostocoides 20215 Nostocoida
@ref: 42743
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Intrasporangiaceae
genus: Tetrasphaera
species: Tetrasphaera sp.
full scientific name: Tetrasphaera sp.
strain designation: YC 6726
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 42743 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf | |
| 42743 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
culture temp
- @ref: 42743
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 42743
- sample type: rice field under tillage
- geographic location: Jinju
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_86954.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_1391;97_3482;98_21833;99_86954&stattab=map
- Last taxonomy: Intrasporangiaceae
- 16S sequence: EU707564
- Sequence Identity:
- Total samples: 533
- soil counts: 104
- aquatic counts: 207
- animal counts: 216
- plant counts: 6
Sequence information
16S sequences
- @ref: 42743
- description: Tetrasphaera sp. YC6726 16S ribosomal RNA gene, partial sequence
- accession: EU707564
- length: 1390
- database: nuccore
- NCBI tax ID: 535908
External links
@ref: 42743
culture collection no.: DSM 21413
straininfo link
- @ref: 96529
- straininfo: 402044
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42743 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21413 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21413) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 96529 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402044.1 |