Strain identifier
BacDive ID: 140065
Type strain: 
Species: Luteimicrobium xylanilyticum
Strain Designation: W-15
Strain history: <- KS Bae, KRIBB
NCBI tax ID(s): 1133546 (species)
version 9 (current version)
General
@ref: 42672
BacDive-ID: 140065
DSM-Number: 105782
keywords: 16S sequence, Bacteria, aerobe, Gram-positive
description: Luteimicrobium xylanilyticum W-15 is an aerobe, Gram-positive bacterium that was isolated from gut, long-horned beetle Massicus raddei.
NCBI tax id
- NCBI tax id: 1133546
- Matching level: species
strain history
| @ref | history |
|---|---|
| 42672 | <- JCM, RIKEN BioResource Center, Tsukuba; JCM 18090 <- K. S. Bae, Korean Collection for Type Cultures, Biological Resources Center, Korea Institute of Bioscience and Biotechnology (KRIBB); W-15 |
| 67770 | K. S. Bae W-15. |
| 67771 | <- KS Bae, KRIBB |
doi: 10.13145/bacdive140065.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Promicromonosporaceae
- genus: Luteimicrobium
- species: Luteimicrobium xylanilyticum
- full scientific name: Luteimicrobium xylanilyticum Kim et al. 2014
@ref: 42672
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Promicromonosporaceae
genus: Luteimicrobium
species: Luteimicrobium xylanilyticum
full scientific name: Luteimicrobium xylanilyticum Kim et al. 2014
strain designation: W-15
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: positive
Culture and growth conditions
culture medium
- @ref: 42672
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 42672 | positive | growth | 28 |
| 67770 | positive | growth | 25 |
| 67771 | positive | growth | 25 |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
observation
| @ref | observation |
|---|---|
| 67770 | quinones: MK-8(H2) |
| 67771 | quinones: MK-8(H2) |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|---|
| 42672 | gut, long-horned beetle Massicus raddei | Massicus raddei | near Daejeon district | Republic of Korea | KOR | Asia | 36.3622 | 127.225 |
| 67770 | Gut of a long-horned beetle Massicus raddei collected near the Daejeon district | Massicus raddei | Republic of Korea | KOR | Asia | |||
| 67771 | From insect gut | Daejeon | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Arthropoda | #Insecta |
| #Host Body-Site | #Gastrointestinal tract | #Stomach |
taxonmaps
- @ref: 69479
- File name: preview.99_8024.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_179;97_4558;98_5849;99_8024&stattab=map
- Last taxonomy: Promicromonosporaceae
- 16S sequence: JQ039191
- Sequence Identity:
- Total samples: 230
- soil counts: 157
- aquatic counts: 14
- animal counts: 47
- plant counts: 12
Safety information
risk assessment
- @ref: 42672
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 42672
- description: Luteimicrobium xylanilyticum strain W-15 16S ribosomal RNA gene, partial sequence
- accession: JQ039191
- length: 1461
- database: nuccore
- NCBI tax ID: 1133546
GC content
| @ref | GC-content | method |
|---|---|---|
| 67771 | 73.8 | |
| 67770 | 73.8 | high performance liquid chromatography (HPLC) |
External links
@ref: 42672
culture collection no.: DSM 105782, JCM 18090, KCTC 19882
straininfo link
- @ref: 96479
- straininfo: 398663
literature
- topic: Phylogeny
- Pubmed-ID: 24491830
- title: Luteimicrobium xylanilyticum sp. nov., isolated from the gut of a long-horned beetle, Massicus raddei.
- authors: Kim H, Oh HW, Kim JA, Park DS, Park HM, Bae KS
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.048991-0
- year: 2014
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Coleoptera/*microbiology, DNA, Bacterial/genetics, Digestive System/microbiology, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42672 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105782 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105782) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 96479 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398663.1 |