Strain identifier
BacDive ID: 140038
Type strain: 
Species: Zhongshania borealis
Strain Designation: CL-AS9
Strain history: B. C. Cho CL-AS9.
NCBI tax ID(s): 889488 (species)
version 8.1 (current version)
General
@ref: 42645
BacDive-ID: 140038
DSM-Number: 105348
keywords: 16S sequence, Bacteria, psychrophilic
description: Zhongshania borealis CL-AS9 is a psychrophilic bacterium that was isolated from coastal seawater.
NCBI tax id
- NCBI tax id: 889488
- Matching level: species
strain history
| @ref | history |
|---|---|
| 42645 | <- JCM <- B.C. Cho,Microbial Oceanography Laboratory, Seoul National University, Seoul, Republic of Korea |
| 67770 | B. C. Cho CL-AS9. |
doi: 10.13145/bacdive140038.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Cellvibrionales
- family: Spongiibacteraceae
- genus: Zhongshania
- species: Zhongshania borealis
- full scientific name: Zhongshania borealis (Jang et al. 2011) Lo et al. 2014
synonyms
- @ref: 20215
- synonym: Spongiibacter borealis
@ref: 42645
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Spongiibacteraceae
genus: Zhongshania
species: Zhongshania borealis
full scientific name: Zhongshania borealis (Jang et al. 2011) Lo et al. 2014
strain designation: CL-AS9
type strain: no
Morphology
multimedia
- @ref: 42645
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_105348.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 42645
- name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514f
- composition: Name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) Composition: NaCl 19.4 g/l Agar 15.0 g/l MgCl2 8.8 g/l Peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 42645 | positive | growth | 20 | psychrophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-8
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 42645 | coastal seawater | Ny-Alesund | Svalbard and Jan Mayen Islands | NOR | Europe | 78.9167 | 11.9333 |
| 67770 | Arctic seawater |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Terrestrial | #Coast |
taxonmaps
- @ref: 69479
- File name: preview.99_3871.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_305;96_1986;97_2387;98_2948;99_3871&stattab=map
- Last taxonomy: Zhongshania
- 16S sequence: HQ199599
- Sequence Identity:
- Total samples: 4397
- soil counts: 107
- aquatic counts: 3986
- animal counts: 283
- plant counts: 21
Safety information
risk assessment
- @ref: 42645
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 42645
- description: Spongiibacter borealis strain CL-AS9 16S ribosomal RNA gene, partial sequence
- accession: HQ199599
- length: 1429
- database: ena
- NCBI tax ID: 889488
GC content
- @ref: 67770
- GC-content: 53.6
- method: high performance liquid chromatography (HPLC)
External links
@ref: 42645
culture collection no.: DSM 105348, JCM 17304, KCCM 90094
straininfo link
- @ref: 96460
- straininfo: 407052
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21257692 | Description of Spongiibacter borealis sp. nov., isolated from Arctic seawater, and reclassification of Melitea salexigens Urios et al. 2008 as a later heterotypic synonym of Spongiibacter marinus Graeber et al. 2008 with emended descriptions of the genus Spongiibacter and Spongiibacter marinus. | Jang GI, Hwang CY, Choi HG, Kang SH, Cho BC | Int J Syst Evol Microbiol | 10.1099/ijs.0.028795-0 | 2011 | Alteromonadaceae/*classification/genetics/isolation & purification/metabolism, Arctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Gammaproteobacteria/*classification/genetics/isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology | Metabolism |
| Phylogeny | 25122615 | Zhongshania aliphaticivorans sp. nov., an aliphatic hydrocarbon-degrading bacterium isolated from marine sediment, and transfer of Spongiibacter borealis Jang et al. 2011 to the genus Zhongshania as Zhongshania borealis comb. nov. | Lo N, Kang HJ, Jeon CO | Int J Syst Evol Microbiol | 10.1099/ijs.0.068593-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Hydrocarbons/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Genetics |
| Phylogeny | 29881873 | Zhongshania ponticola sp. nov., a novel lipolytic bacterium of the class Gammaproteobacteria isolated from seawater. | Park S, Park JM, Lee JS, Yoon JH | Arch Microbiol | 10.1007/s00203-018-1538-7 | 2018 | Base Composition, DNA, Bacterial/chemistry, Fatty Acids/chemistry, Gammaproteobacteria/chemistry/*classification/genetics/isolation & purification, Lipolysis, Phosphatidylethanolamines/analysis, Phosphatidylglycerols/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology | Enzymology |
| Phylogeny | 30570482 | Zhongshania marina sp. nov., isolated from deep-sea water. | On YG, Oh JS, Roh DH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003195 | 2018 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
| Phylogeny | 35982281 | Zhongshania aquimaris sp. nov., isolated from seawater. | Weerawongwiwat V, Kim JH, Lee JS, Yoon JH, Sukhoom A, Kim W | Arch Microbiol | 10.1007/s00203-022-03184-2 | 2022 | Bacterial Typing Techniques, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, *Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, *Seawater/microbiology, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42645 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105348 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105348) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 96460 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407052.1 |