Strain identifier
BacDive ID: 139937
Type strain: 
Species: Magnetospirillum sp.
Strain Designation: WD
Strain history: <- J. D. Coates, Univ. of California, Berkeley, USA; WD <- U. Michaelidou {1999}
NCBI tax ID(s): 31872 (species)
version 9 (current version)
General
@ref: 42545
BacDive-ID: 139937
DSM-Number: 21661
keywords: genome sequence, 16S sequence, Bacteria
description: Magnetospirillum sp. WD is a bacterium that was isolated from swine waste lagoon.
NCBI tax id
- NCBI tax id: 31872
- Matching level: species
strain history
- @ref: 42545
- history: <- J. D. Coates, Univ. of California, Berkeley, USA; WD <- U. Michaelidou {1999}
doi: 10.13145/bacdive139937.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Rhodospirillaceae
- genus: Magnetospirillum
- species: Magnetospirillum sp.
- full scientific name: Magnetospirillum Schleifer et al. 1992
synonyms
@ref synonym 20215 Phaeospirillum 20215 Paramagnetospirillum
@ref: 42545
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Rhodospirillaceae
genus: Magnetospirillum
species: Magnetospirillum sp.
full scientific name: Magnetospirillum sp.
strain designation: WD
type strain: no
Culture and growth conditions
culture medium
- @ref: 42545
- name: FWM MEDIUM (PERCHLORATE) (DSMZ Medium 503b)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium503b.pdf
culture temp
- @ref: 42545
- growth: positive
- type: growth
- temperature: 30
Isolation, sampling and environmental information
isolation
- @ref: 42545
- sample type: swine waste lagoon
- geographic location: Illinois, Southern Illinois University Agricultural Research Center, Carbondale Campus
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Waste | |
| #Environmental | #Aquatic | |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_17397.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_215;96_1587;97_6183;98_13172;99_17397&stattab=map
- Last taxonomy: Magnetospirillum bellicus subclade
- 16S sequence: AF170352
- Sequence Identity:
- Total samples: 11
- soil counts: 2
- aquatic counts: 9
Sequence information
16S sequences
- @ref: 42545
- description: Dechlorospirillum sp. WD 16S ribosomal RNA gene, complete sequence
- accession: AF170352
- length: 1472
- database: nuccore
- NCBI tax ID: 100868
Genome sequences
- @ref: 66792
- description: Magnetospirillum sp. WD
- accession: 2508501007
- assembly level: draft
- database: img
- NCBI tax ID: 100868
External links
@ref: 42545
culture collection no.: DSM 21661
straininfo link
- @ref: 96367
- straininfo: 398480
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42545 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21661 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21661) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 96367 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398480.1 |