Strain identifier

BacDive ID: 1398

Type strain: Yes

Species: Ureibacillus suwonensis

Strain Designation: 6T-19

Strain history: CIP <- 2006, DSMZ <- S. W. Kwon: strain 6T-19

NCBI tax ID(s): 313007 (species)

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General

@ref: 6493

BacDive-ID: 1398

DSM-Number: 16752

keywords: 16S sequence, Bacteria, obligate aerobe, spore-forming, Gram-negative, motile, rod-shaped

description: Ureibacillus suwonensis 6T-19 is an obligate aerobe, spore-forming, Gram-negative bacterium that was isolated from compost, cotton.

NCBI tax id

  • NCBI tax id: 313007
  • Matching level: species

strain history

@refhistory
6493<- S.-W. Kwon; 6T-19
123393CIP <- 2006, DSMZ <- S. W. Kwon: strain 6T-19

doi: 10.13145/bacdive1398.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Ureibacillus
  • species: Ureibacillus suwonensis
  • full scientific name: Ureibacillus suwonensis Kim et al. 2006

@ref: 6493

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanaceae

genus: Ureibacillus

species: Ureibacillus suwonensis

full scientific name: Ureibacillus suwonensis Kim et al. 2006

strain designation: 6T-19

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
23025negative1.5-2.0 µm0.5-0.7 µmrod-shapedyesperitrichous
123393negativerod-shapedyes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6493CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
37477MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123393CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
6493positivegrowth55
23025positivegrowth35.0-60.0
23025positivegrowth35.0
23025nogrowth65.0
37477positivegrowth37

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
23025obligate aerobe
123393obligate aerobe

spore formation

  • @ref: 23025
  • spore description: spherical or oval,subterminal or terminal,in swollen sporangia
  • type of spore: spore
  • spore formation: yes

halophily

  • @ref: 23025
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 5.0 %

murein

  • @ref: 23025
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2302517634D-glucose-builds acid from
2302516899D-mannitol-builds acid from
2302565327D-xylose-builds acid from
2302530849L-arabinose-builds acid from
23025casein-hydrolysis
230254853esculin-hydrolysis
230255291gelatin-hydrolysis
2302528017starch-hydrolysis
2302516199urea-hydrolysis
2302517632nitrate-reduction
12339317632nitrate-reduction
12339316301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
2302535581indoleno
2302515688acetoinno
12339335581indoleno

metabolite tests

  • @ref: 23025
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
23025arginine dihydrolase+3.5.3.6
23025catalase+1.11.1.6
23025cytochrome oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
123393oxidase+
123393alcohol dehydrogenase-1.1.1.1
123393catalase+1.11.1.6
123393lysine decarboxylase-4.1.1.18
123393ornithine decarboxylase-4.1.1.17
123393urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123393-+++------++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture temperature
6493compost, cottonSuwonRepublic of KoreaKORAsia
23025cotton composts for the cultivation of oyster mushroom (Pleurotus ostreatus)TSA medium50.0
123393Environment, Cotton compostsSuwonRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Biodegradation#Composting
#Engineered#Food production#Food
#Host#Fungi#Mushroom
#Host#Plants#Shrub (Scrub)

taxonmaps

  • @ref: 69479
  • File name: preview.99_81397.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_8510;97_42068;98_54912;99_81397&stattab=map
  • Last taxonomy: Ureibacillus suwonensis
  • 16S sequence: AY850379
  • Sequence Identity:
  • Total samples: 911
  • soil counts: 366
  • aquatic counts: 118
  • animal counts: 334
  • plant counts: 93

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
64931Risk group (German classification)
1233931Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6493
  • description: Ureibacillus suwonensis strain 6T19 16S ribosomal RNA gene, partial sequence
  • accession: AY850379
  • length: 1480
  • database: nuccore
  • NCBI tax ID: 313007

GC content

@refGC-contentmethod
649341.5
2302541.5high performance liquid chromatography (HPLC)

External links

@ref: 6493

culture collection no.: DSM 16752, CIP 109211, KACC 11287

straininfo link

  • @ref: 71049
  • straininfo: 291014

literature

  • topic: Phylogeny
  • Pubmed-ID: 16514046
  • title: Ureibacillus suwonensis sp. nov., isolated from cotton waste composts.
  • authors: Kim BY, Lee SY, Weon HY, Kwon SW, Go SJ, Park YK, Schumann P, Fritze D
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63703-0
  • year: 2006
  • mesh: Bacillus/*classification/genetics/isolation & purification/physiology, DNA, Bacterial, DNA, Ribosomal/chemistry, Gossypium, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
  • topic2: Phenotype

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6493Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16752)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16752
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23025Byung-Yong Kim,Seon-Young Lee,Hang-Yeon Weon,Soon-Wo Kwon,Seung-Joo Go,Yong-Keun Park,Peter Schumann,Dagmar Fritze10.1099/ijs.0.63703-0Ureibacillus suwonensis sp. nov., isolated from cotton waste compostsIJSEM 56: 663-666 200616514046
37477Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6927
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71049Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID291014.1StrainInfo: A central database for resolving microbial strain identifiers
123393Curators of the CIPCollection of Institut Pasteur (CIP 109211)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109211