Strain identifier
BacDive ID: 13953
Type strain: 
Species: Magnetospirillum fulvum
Strain Designation: 3
Strain history: <- T. Horath; strain 3
NCBI tax ID(s): 1082 (species)
version 8.1 (current version)
General
@ref: 4974
BacDive-ID: 13953
DSM-Number: 13234
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative
description: Magnetospirillum fulvum 3 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from highland, wet land.
NCBI tax id
- NCBI tax id: 1082
- Matching level: species
strain history
- @ref: 4974
- history: <- T. Horath; strain 3
doi: 10.13145/bacdive13953.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Rhodospirillaceae
- genus: Magnetospirillum
- species: Magnetospirillum fulvum
- full scientific name: Magnetospirillum fulvum (van Niel 1944) Hördt et al. 2020
synonyms
@ref synonym 20215 Rhodospirillum fulvum 20215 Phaeospirillum fulvum
@ref: 4974
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Rhodospirillaceae
genus: Magnetospirillum
species: Magnetospirillum fulvum
full scientific name: Magnetospirillum fulvum (van Niel 1944) Hördt et al. 2020
strain designation: 3
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.999
Culture and growth conditions
culture medium
- @ref: 4974
- name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)
- growth: yes
- link: https://mediadive.dsmz.de/medium/27
- composition: Name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27) Composition: Disodium succinate 1.0 g/l KH2PO4 0.5 g/l Ammonium acetate 0.5 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l MgSO4 x 7 H2O 0.4 g/l Yeast extract 0.3 g/l L-Cysteine HCl 0.3 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water
culture temp
- @ref: 4974
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 4974 | anaerobe | |
| 69480 | anaerobe | 97.61 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.992 |
Isolation, sampling and environmental information
isolation
- @ref: 4974
- sample type: highland, wet land
- geographic location: West of Lago di Cadagno, Canton of Ticino
- country: Switzerland
- origin.country: CHE
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Wetland (Swamp)
Safety information
risk assessment
- @ref: 4974
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Rhodospirillum fulvum partial 16S rRNA gene, strain DSM 13 234
- accession: AJ289106
- length: 428
- database: ena
- NCBI tax ID: 1082
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Magnetospirillum fulvum DSM 13234 | GCA_900108475 | scaffold | ncbi | 1082 |
| 66792 | Phaeospirillum fulvum strain DSM 13234 | 1082.3 | wgs | patric | 1082 |
| 66792 | Magnetospirillum fulvum DSM 13234 | 2597490343 | draft | img | 1082 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| glucose-ferment | no | 85.915 | no |
| motile | yes | 89.301 | no |
| flagellated | yes | 71.787 | no |
| gram-positive | no | 99.433 | no |
| anaerobic | yes | 96.509 | yes |
| aerobic | no | 97.658 | yes |
| halophile | no | 95.202 | no |
| spore-forming | no | 88.503 | no |
| thermophile | no | 99.16 | yes |
| glucose-util | no | 54.672 | no |
External links
@ref: 4974
culture collection no.: DSM 13234
straininfo link
- @ref: 83126
- straininfo: 49443
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4974 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13234) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13234 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 83126 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49443.1 | StrainInfo: A central database for resolving microbial strain identifiers |