Magnetospirillum fulvum (DSM 13234, 3)

Name: Magnetospirillum fulvum (DSM 13234, 3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13953

Type strain

Strain Designation 3

Culture col. no. DSM 13234 3

NCBI tax ID(s) 1082

Special Collections DSMZ

History <- T. Horath; strain 3

Links

Magnetospirillum fulvum 3 is an anaerobe bacterium that was isolated from highland, wet land.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49443

DSM 13234

@ref 20215

Last LPSN update 2026-02-09 11:21:17

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Rhodospirillaceae

Genus Magnetospirillum

Species Magnetospirillum fulvum

Full scientific name Magnetospirillum fulvum (van Niel 1944) Hördt et al. 2020

Synonyms (2)

Rhodospirillum fulvum
Phaeospirillum fulvum

BacDive ID	Other strains from **Magnetospirillum fulvum** (5)	Type strain
13948	M. fulvum 1360, DSM 113, ATCC 15798, KCTC 15608, Pfennig ... (type strain)
13949	M. fulvum 2860, DSM 114, Pfennig 2860
13950	M. fulvum 10060, DSM 115, Pfennig 10060
13951	M. fulvum Berkeley 147, DSM 116
13952	M. fulvum P 9 F 2, DSM 117

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.994
125439	negative	99.4

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4974	RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)		Medium recipe at MediaDive	Name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27) Composition: Disodium succinate 1.0 g/l KH2PO4 0.5 g/l Ammonium acetate 0.5 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l MgSO4 x 7 H2O 0.4 g/l Yeast extract 0.3 g/l L-Cysteine HCl 0.3 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4974	positive	growth	28

Physiology and metabolism

Oxygen tolerance

4974

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		98.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Wetland (Swamp)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4974	highland, wet land	West of Lago di Cadagno, Canton of Ticino	Switzerland	CHE	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4974	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2597490343 annotated assembly for Magnetospirillum fulvum DSM 13234	scaffold	GCA_900108475	1082.3	2597490343	1082	65.32

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Rhodospirillum fulvum partial 16S rRNA gene, strain DSM 13 234	AJ289106	428		1082

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Magnetospirillum fulvum DSM 13234
NCBI: GCA_900108475

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.20	no
125439	motility	BacteriaNetⓘ	yes	71.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	81.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Magnetospirillum fulvum DSM 13234
NCBI: GCA_900108475.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.99	no
125438	anaerobic	anaerobicⓘ	no	50.99	no
125438	aerobic	aerobicⓘ	no	80.83	yes
125438	spore-forming	spore-formingⓘ	no	85.44	no
125438	thermophilic	thermophileⓘ	no	95.76	yes
125438	flagellated	motile2+ⓘ	yes	79.03	no

Literature

References

#4974	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13234
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us