Strain identifier
BacDive ID: 139436
Type strain: 
Species: Lactiplantibacillus modestisalitolerans
Strain Designation: NB446
Strain history: CIP <- 2015, NBRC <- BCC <- P. Rattanawaree, Thailand: strain NB446
NCBI tax ID(s): 1457219 (species)
version 9.3 (current version)
General
@ref: 41631
BacDive-ID: 139436
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Lactiplantibacillus modestisalitolerans NB446 is a mesophilic bacterium of the family Lactobacillaceae.
NCBI tax id
- NCBI tax id: 1457219
- Matching level: species
strain history
- @ref: 41631
- history: CIP <- 2015, NBRC <- BCC <- P. Rattanawaree, Thailand: strain NB446
doi: 10.13145/bacdive139436.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactiplantibacillus
- species: Lactiplantibacillus modestisalitolerans
- full scientific name: Lactiplantibacillus modestisalitolerans (Miyashita et al. 2015) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus modestisalitolerans
@ref: 41631
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus modestisalitolerans
strain designation: NB446
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain | cell shape |
|---|---|---|---|---|
| 125438 | no | 90 | ||
| 125438 | 93.52 | positive | ||
| 41631 | no | positive | rod-shaped |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 41631 | MEDIUM 40- for Lactobacillus and Leuconostoc | yes | Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g) | |
| 41631 | CIP Medium 40 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40 |
culture temp
- @ref: 41631
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: microaerophile
- confidence: 93.3
Isolation, sampling and environmental information
isolation
| @ref | country | origin.country | continent | sample type | geographic location | isolation date |
|---|---|---|---|---|---|---|
| 41631 | Thailand | THA | Asia | |||
| 41631 | Thailand | THA | Asia | Fermented fish, Pla-jom | Surin, Thailand | 2008-08-01 |
Safety information
risk assessment
- @ref: 41631
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 124043
- description: Lactobacillus modestisalitolerans gene for 16S ribosomal RNA, partial sequence.
- accession: AB907192
- length: 1492
- database: nuccore
- NCBI tax ID: 1457219
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Lactiplantibacillus modestisalitolerans NBRC 107235 | GCA_005405425 | contig | ncbi | 1457219 |
| 66792 | Lactobacillus modestisalitolerans strain NBRC 107235 | 1457219.4 | wgs | patric | 1457219 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 93.52 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 88.426 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 83.029 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 95.928 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.996 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 90 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 59.2 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 57.3 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 83.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 93.3 |
External links
@ref: 41631
culture collection no.: CIP 110953, NBRC 107235, BCC 38191
straininfo link
- @ref: 95938
- straininfo: 413088
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 41631 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110953 | Collection of Institut Pasteur (CIP 110953) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 95938 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID413088.1 | |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |