Strain identifier

BacDive ID: 139416

Type strain: No

Species: Bordetella trematum

Strain Designation: GLG 4604

Strain history: CIP <- 1997, CCUG <- 1989, G.L. Gilardi, NY, USA: strain GLG 4604

NCBI tax ID(s): 123899 (species)

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General

@ref: 41580

BacDive-ID: 139416

keywords: Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Bordetella trematum GLG 4604 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Alcaligenaceae.

NCBI tax id

  • NCBI tax id: 123899
  • Matching level: species

strain history

  • @ref: 41580
  • history: CIP <- 1997, CCUG <- 1989, G.L. Gilardi, NY, USA: strain GLG 4604

doi: 10.13145/bacdive139416.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Bordetella
  • species: Bordetella trematum
  • full scientific name: Bordetella trematum Vandamme et al. 1996

@ref: 41580

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Bordetella

species: Bordetella trematum

strain designation: GLG 4604

type strain: no

Morphology

cell morphology

  • @ref: 41580
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 41580
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41580MEDIUM 21 - for BordetellayesDistilled water make up to (1000.000 ml);Horse blood (250.000 ml);Bordetgengou agar (30.000 g)
41580CIP Medium 21yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=21

culture temp

@refgrowthtypetemperaturerange
41580positivegrowth30mesophilic
41580positivegrowth15-41
41580nogrowth5psychrophilic
41580nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 41580
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
41580NaClpositivegrowth0-8 %
41580NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
415804853esculin-hydrolysis
41580606565hippurate-hydrolysis
4158017632nitrate-builds gas from
4158017632nitrate-reduction
4158016301nitrite-builds gas from
4158016301nitrite-reduction
4158015792malonate+assimilation
4158017234glucose-degradation
4158017632nitrate-respiration

antibiotic resistance

  • @ref: 41580
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
4158035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
4158015688acetoin-
4158017234glucose+

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
41580oxidase-
41580beta-galactosidase-3.2.1.23
41580alcohol dehydrogenase-1.1.1.1
41580gelatinase-
41580amylase-
41580DNase-
41580caseinase-3.4.21.50
41580catalase+1.11.1.6
41580tween esterase-
41580gamma-glutamyltransferase-2.3.2.2
41580lecithinase-
41580lipase+
41580lysine decarboxylase-4.1.1.18
41580ornithine decarboxylase-4.1.1.17
41580phenylalanine ammonia-lyase-4.3.1.24
41580protease-
41580tryptophan deaminase-
41580urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    48025C12:01.312
    48025C14:01.614
    48025C16:032.716
    48025C18:03.118
    48025C12:0 2OH1.613.178
    48025C12:0 ALDE ?0.710.915
    48025C14:0 2OH3.415.205
    48025C14:0 3OH/C16:1 ISO I7.215.485
    48025C16:1 ω7c27.915.819
    48025C17:0 CYCLO14.616.888
    48025C18:1 ω7c /12t/9t5.817.824
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
41580-+++-+----++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
48025+---------------++++-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
41580-------------------------------------------++---+++--+-------+-----------+-+-+-+++-----++-++++--+-+

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typesampling dateisolation date
41580USAUSANorth America
48025USAUSANorth AmericaHuman leg wound1983
41580United States of AmericaUSANorth AmericaHuman, Leg wound1983

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Limb#Leg
#Host Body-Site#Other#Wound
#Infection#Patient

Safety information

risk assessment

  • @ref: 41580
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 41580

culture collection no.: CIP 105306, CCUG 24727, LMG 14523

straininfo link

  • @ref: 95919
  • straininfo: 9889

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41580Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105306Collection of Institut Pasteur (CIP 105306)
48025Curators of the CCUGhttps://www.ccug.se/strain?id=24727Culture Collection University of Gothenburg (CCUG) (CCUG 24727)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
95919Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID9889.1