Strain identifier
BacDive ID: 13930
Type strain: 
Species: Azovibrio restrictus
Strain Designation: S5b2
Strain history: <- LMG <- B. Reinhold-Hurek, Univ. Bremen, Germany
NCBI tax ID(s): 1121035 (strain), 146938 (species)
version 8.1 (current version)
General
@ref: 17415
BacDive-ID: 13930
DSM-Number: 23866
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Azovibrio restrictus S5b2 is a mesophilic, motile bacterium that was isolated from Kallar grass, surface-sterilized roots.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 146938 | species |
| 1121035 | strain |
strain history
- @ref: 17415
- history: <- LMG <- B. Reinhold-Hurek, Univ. Bremen, Germany
doi: 10.13145/bacdive13930.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Rhodocyclales
- family: Rhodocyclaceae
- genus: Azovibrio
- species: Azovibrio restrictus
- full scientific name: Azovibrio restrictus Reinhold-Hurek and Hurek 2000
@ref: 17415
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Rhizobiales
family: Rhodocyclaceae
genus: Azovibrio
species: Azovibrio restrictus
full scientific name: Azovibrio restrictus Reinhold-Hurek and Hurek 2000
strain designation: S5b2
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 99.69 | |
| 69480 | 99.999 | negative |
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 66793 | EM_DSM_23866_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_23866_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_23866_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_23866_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_23866_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
- @ref: 17415
- name: OXOID NUTRIENT BROTH (DSMZ Medium 948)
- growth: yes
- link: https://mediadive.dsmz.de/medium/948
- composition: Name: OXOID NUTRIENT BROTH (DSMZ Medium 948) Composition: Nutrient broth 13.0 g/l Distilled water
culture temp
- @ref: 17415
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.984 |
Isolation, sampling and environmental information
isolation
- @ref: 17415
- sample type: Kallar grass, surface-sterilized roots
- geographic location: Punjab
- country: Pakistan
- origin.country: PAK
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
| #Host Body-Site | #Plant | #Sterilized plant part |
Safety information
risk assessment
- @ref: 17415
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17415
- description: Azovibrio restrictus 16S ribosomal RNA gene, partial sequence
- accession: AF011346
- length: 1485
- database: ena
- NCBI tax ID: 146938
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Azovibrio restrictus DSM 23866 | GCA_000429665 | scaffold | ncbi | 1121035 |
| 66792 | Azovibrio restrictus DSM 23866 | 1121035.3 | wgs | patric | 1121035 |
| 66792 | Azovibrio restrictus DSM 23866 | 2526164512 | draft | img | 1121035 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 89.955 | no |
| flagellated | yes | 85.061 | no |
| gram-positive | no | 99.13 | no |
| anaerobic | no | 71.371 | no |
| aerobic | no | 77.781 | no |
| halophile | no | 94.643 | no |
| spore-forming | no | 92.743 | no |
| thermophile | no | 98.282 | no |
| glucose-util | no | 77.117 | no |
| glucose-ferment | no | 88.214 | no |
External links
@ref: 17415
culture collection no.: DSM 23866, LMG 22128, LMG 9099
straininfo link
- @ref: 83104
- straininfo: 13096
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 17415 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23866) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23866 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 83104 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13096.1 | StrainInfo: A central database for resolving microbial strain identifiers |