Strain identifier

BacDive ID: 1393

Type strain: Yes

Species: Thalassobacillus pellis

Strain Designation: 18 OM, 18OM

Strain history: C. Sánchez-Porro 18OM.

NCBI tax ID(s): 748008 (species)

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General

@ref: 16516

BacDive-ID: 1393

DSM-Number: 22784

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, moderately halophilic, spore-forming, Gram-positive, motile, rod-shaped, colony-forming

description: Thalassobacillus pellis 18 OM is an obligate aerobe, moderately halophilic, spore-forming bacterium that forms circular colonies and was isolated from salted animal hides.

NCBI tax id

  • NCBI tax id: 748008
  • Matching level: species

strain history

@refhistory
16516<- C. Sánchez-Porro, Univ. Seville, Dept. Microbiol. Parasitol., Spain; 18OM <- P. Yilmaz
67770C. Sánchez-Porro 18OM.

doi: 10.13145/bacdive1393.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Thalassobacillus
  • species: Thalassobacillus pellis
  • full scientific name: Thalassobacillus pellis Sánchez-Porro et al. 2011

@ref: 16516

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Thalassobacillus

species: Thalassobacillus pellis

full scientific name: Thalassobacillus pellis Sánchez-Porro et al. 2011

strain designation: 18 OM, 18OM

type strain: yes

Morphology

cell morphology

  • @ref: 23023
  • gram stain: positive
  • cell length: 1.5-6.0 µm
  • cell width: 1.0 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 23023
  • colony size: 1.0-2.0 mm
  • colony color: cream
  • colony shape: circular
  • incubation period: 2 days
  • medium used: 10 % HM agar medium

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16516BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l MnSO4 Distilled water
2302310 % HM agar mediumyes

culture temp

@refgrowthtypetemperature
16516positivegrowth30
23023positivegrowth15.0-45.0
23023positiveoptimum37.0
67770positivegrowth37

culture pH

@refabilitytypepHPH range
23023positivegrowth5.0-9.0alkaliphile
23023positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 23023
  • oxygen tolerance: obligate aerobe

spore formation

@refspore descriptiontype of sporespore formationconfidence
23023ellipsoidal,terminal,in swollen sporangiaendosporeyes
69480yes91.293
69481yes100

halophily

@refhalophily levelsaltgrowthtested relationconcentration
23023moderately halophilic
23023NaClpositivegrowth0.5-25.0 %(w/v)
23023NaCloptimum10.0 %(w/v)

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2302317108D-arabinose-builds acid from
2302312936D-galactose-builds acid from
2302316899D-mannitol-builds acid from
2302316024D-mannose-builds acid from
2302317716lactose-builds acid from
2302317306maltose-builds acid from
2302316947citrate-carbon source
2302317234glucose-fermentation
2302328017starch-hydrolysis
2302353426tween 80-hydrolysis
2302337166xylan-hydrolysis
2302317632nitrate-reduction
2302315824D-fructose+builds acid from
2302317634D-glucose+builds acid from
2302365327D-xylose+builds acid from
2302317754glycerol+builds acid from
2302317992sucrose+builds acid from
2302327082trehalose+builds acid from
23023casein+hydrolysis
2302316991dna+hydrolysis
230234853esculin+hydrolysis
230235291gelatin+hydrolysis
2302327941pullulan+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
2302318208penicillin gyesyes10 Unit
230237507neomycinyesyes10 µg
230236104kanamycinyesyes30 µg
23023100147nalidixic acidyesyes30 µg
2302348923erythromycinyesyes15 µg
230233542cephalothinyesyes30 µg
2302317698chloramphenicolyesyes30 µg
2302328368novobiocinyesyes30 µg

metabolite production

@refChebi-IDmetaboliteproduction
2302335581indoleno
2302316136hydrogen sulfideno
2302315688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-testcitrate test
2302315688acetoin-
2302317234glucose-
2302316947citrate-

enzymes

@refvalueactivityec
23023arginine decarboxylase-4.1.1.19
23023beta-galactosidase-3.2.1.23
23023catalase+1.11.1.6
23023cytochrome oxidase+1.9.3.1
23023lysine decarboxylase-4.1.1.18
23023ornithine decarboxylase-4.1.1.17
23023phenylalanine deaminase-4.3.1.5
23023phosphatase+
23023urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countryenrichment cultureenrichment culture durationenrichment culture temperature
16516salted animal hidesIstanbulTurkeyTUR
23023R2A medium (Difco) supplemented with a mixture of 15 % salts7 days37.0
67770Salted animal hides

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Organ#Skin, Nail, Hair
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_95614.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_469;97_3483;98_4405;99_95614&stattab=map
  • Last taxonomy: Thalassobacillus pellis
  • 16S sequence: FN690978
  • Sequence Identity:
  • Total samples: 51
  • soil counts: 45
  • aquatic counts: 2
  • animal counts: 4

Sequence information

16S sequences

  • @ref: 16516
  • description: Thalassobacillus pellis partial 16S rRNA gene, strain 18OM
  • accession: FN690978
  • length: 1470
  • database: nuccore
  • NCBI tax ID: 748008

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Thalassobacillus pellis DSM 22784GCA_016908295contigncbi748008
66792Thalassobacillus pellis strain DSM 22784748008.3wgspatric748008
66792Thalassobacillus pellis DSM 227842901096299draftimg748008

GC content

  • @ref: 16516
  • GC-content: 42.9
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesyes100no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes84.193yes
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no91.299yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes76.12no
69480spore-formingspore-formingAbility to form endo- or exosporesyes91.293yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno90.452yes
69480flagellatedmotile2+Ability to perform flagellated movementyes84.473no

External links

@ref: 16516

culture collection no.: DSM 22784, CECT 7566, JCM 16412

straininfo link

  • @ref: 71044
  • straininfo: 377312

literature

  • topic: Phylogeny
  • Pubmed-ID: 20562240
  • title: Thalassobacillus pellis sp. nov., a moderately halophilic, Gram-positive bacterium isolated from salted hides.
  • authors: Sanchez-Porro C, Yilmaz P, de la Haba RR, Birbir M, Ventosa A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.024778-0
  • year: 2010
  • mesh: Bacillaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Fatty Acids/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/*metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16516Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22784)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22784
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23023Cristina Sánchez-Porro,Pinar Yilmaz,Rafael R. de la Haba,Meral Birbir,Antonio Ventosa10.1099/ijs.0.024778-0Thalassobacillus pellis sp. nov., a moderately halophilic, Gram-positive bacterium isolated from salted hidesIJSEM 61: 1206-1210 201120562240
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71044Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID377312.1StrainInfo: A central database for resolving microbial strain identifiers