Strain identifier

BacDive ID: 13923

Type strain: Yes

Species: Zoogloea resiniphila

Strain Designation: DhA-35

Variant: Isotype of BacDive ID 132049

Strain history: CIP <- 2000, W.W. Mohn, British Columbia Univ., Vancouver, Canada: strain DhA-35

NCBI tax ID(s): 40561 (species)

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General

@ref: 7059

BacDive-ID: 13923

DSM-Number: 17566

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Zoogloea resiniphila DhA-35 is a mesophilic, Gram-negative, motile bacterium that was isolated from Sequencing Batch Reactor.

NCBI tax id

  • NCBI tax id: 40561
  • Matching level: species

strain history

@refhistory
7059<- W. W. Mohn, Univ. British Columbia, Vancouver, Canada; DhA-35
67770IAM 15294 <-- CIP 106709 <-- W. W. Mohn DhA-35.
122158CIP <- 2000, W.W. Mohn, British Columbia Univ., Vancouver, Canada: strain DhA-35

doi: 10.13145/bacdive13923.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Rhodocyclales
  • family: Zoogloeaceae
  • genus: Zoogloea
  • species: Zoogloea resiniphila
  • full scientific name: Zoogloea resiniphila Mohn et al. 1999

@ref: 7059

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Rhizobiales

family: Zoogloeaceae

genus: Zoogloea

species: Zoogloea resiniphila

full scientific name: Zoogloea resiniphila Mohn et al. 1999

strain designation: DhA-35

variant: Isotype of BacDive ID 132049

type strain: yes

Morphology

cell morphology

  • @ref: 122158
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 122158
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7059TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)yeshttps://mediadive.dsmz.de/medium/545Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
34089MEDIUM 361 - for Zoogloea resiniphilayesDistilled water make up to (1000.000 ml);Agar (16.000 g);Yeast extract (1.000 g);Casitone (5.000 g)

culture temp

@refgrowthtypetemperaturerange
7059positivegrowth30mesophilic
34089positivegrowth30mesophilic
67770positivegrowth27mesophilic
122158positivegrowth25-41
122158nogrowth5psychrophilic
122158nogrowth10psychrophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
122158NaClpositivegrowth0 %
122158NaClnogrowth2 %
122158NaClnogrowth4 %
122158NaClnogrowth6 %
122158NaClnogrowth8 %
122158NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12215816947citrate-carbon source
1221584853esculin-hydrolysis
12215817632nitrate+reduction
12215816301nitrite+reduction
12215817632nitrate+respiration

antibiotic resistance

  • @ref: 122158
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 122158
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
122158oxidase+
122158beta-galactosidase-3.2.1.23
122158alcohol dehydrogenase-1.1.1.1
122158gelatinase-
122158DNase-
122158caseinase-3.4.21.50
122158catalase-1.11.1.6
122158tween esterase-
122158lysine decarboxylase-4.1.1.18
122158ornithine decarboxylase-4.1.1.17
122158tryptophan deaminase-
122158urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122158-+++-+-----+--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122158------------+----------------------------------------------------------------------------+---+-----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
7059Sequencing Batch ReactorBritish Columbia, VancouverCanadaCANNorth America
67770Laboratory sequencing batch reactor in VancouverBritish ColumbiaCanadaCANNorth America
122158Sequencing batch bioreactorVancouverCanadaCANNorth America1994

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Bioreactor

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
70591Risk group (German classification)
1221581Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7059
  • description: Zoogloea resiniphila partial 16S rRNA gene, type strain DhA-35T
  • accession: AJ011506
  • length: 1473
  • database: ena
  • NCBI tax ID: 40561

External links

@ref: 7059

culture collection no.: DSM 17566, ATCC 700687, CIP 106709, JCM 21744, DSM 16780, IAM 15294, KCTC 12438

straininfo link

  • @ref: 83097
  • straininfo: 264310

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism10441704Occurrence of Two Resin Acid-Degrading Bacteria and a Gene Encoding Resin Acid Biodegradation in Pulp and Paper Mill Effluent Biotreatment Systems Assayed by PCR.Yu Z, Martin VJ, Mohn WWMicrob Ecol10.1007/s0024899001631999
Metabolism11235883Bioaugmentation with resin-acid-degrading bacteria enhances resin acid removal in sequencing batch reactors treating pulp mill effluents.Yu Z, Mohn WWWater Res10.1016/s0043-1354(00)00335-32001*Abietanes, Base Sequence, Betaproteobacteria/genetics/*metabolism, Biodegradation, Environmental, Bioreactors, DNA Primers/genetics, Diterpenes/*metabolism, Hydrogen-Ion Concentration, Paper, Polymerase Chain Reaction, Pseudomonas/genetics/*metabolism, *Waste Disposal, Fluid, Water Pollutants, Chemical/*metabolism, Water Purification/methodsEnzymology
Metabolism12146867Bioaugmentation with the resin acid-degrading bacterium Zoogloea resiniphila DhA-35 to counteract pH stress in an aerated lagoon treating pulp and paper mill effluent.Yu Z, Mohn WWWater Res10.1016/s0043-1354(01)00496-12002Biodegradation, Environmental, Biomass, Carbon/metabolism, DNA, Bacterial/*analysis, Hydrogen-Ion Concentration, *Industrial Waste, Paper, RNA/analysis, Waste Disposal, Fluid/*methods, Water Pollutants/*metabolism, Zoogloea/*physiologyStress
Phylogeny19244434Zoogloea caeni sp. nov., a floc-forming bacterium isolated from activated sludge.Shao Y, Chung BS, Lee SS, Park W, Lee SS, Jeon COInt J Syst Evol Microbiol10.1099/ijs.0.65670-02009Bacterial Typing Techniques, Base Composition, DNA, Bacterial, DNA, Ribosomal, Flocculation, Genes, rRNA, Korea, Molecular Sequence Data, Nitrogen Fixation, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Sewage/*microbiology, Species Specificity, Waste Disposal, Fluid/*methods, Zoogloea/*classification/genetics/isolation & purification/physiologyGenetics
Phylogeny25342113Zoogloea oleivorans sp. nov., a floc-forming, petroleum hydrocarbon-degrading bacterium isolated from biofilm.Farkas M, Tancsics A, Kriszt B, Benedek T, Toth EM, Keki Z, Veres PG, Szoboszlay SInt J Syst Evol Microbiol10.1099/ijs.0.068486-02014Bacterial Typing Techniques, Base Composition, Biodegradation, Environmental, *Biofilms, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hungary, Hydrocarbons/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Petroleum/*microbiology, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry, Zoogloea/*classification/genetics/isolation & purificationGenetics

Reference

@idauthorscataloguedoi/urltitle
7059Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17566)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17566
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
34089Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18870
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
83097Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID264310.1StrainInfo: A central database for resolving microbial strain identifiers
122158Curators of the CIPCollection of Institut Pasteur (CIP 106709)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106709