Strain identifier

BacDive ID: 139102

Type strain: No

Species: Bartonella quintana

Strain Designation: Toulouse

Strain history: CIP <- 1993, D. Raoult, Med. Univ., CNR Rickettsies, Marseille, France: strain Toulouse <- M. Maurin

NCBI tax ID(s): 803 (species)

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General

@ref: 41147

BacDive-ID: 139102

keywords: genome sequence, Bacteria, microaerophile, Gram-negative

description: Bartonella quintana Toulouse is a microaerophile, Gram-negative bacterium of the family Bartonellaceae.

NCBI tax id

  • NCBI tax id: 803
  • Matching level: species

strain history

  • @ref: 41147
  • history: CIP <- 1993, D. Raoult, Med. Univ., CNR Rickettsies, Marseille, France: strain Toulouse <- M. Maurin

doi: 10.13145/bacdive139102.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Bartonellaceae
  • genus: Bartonella
  • species: Bartonella quintana
  • full scientific name: Bartonella quintana (Schmincke 1917) Brenner et al. 1993

  • synonyms

    @refsynonym
    20215Rickettsia quintana
    20215Rochalimaea quintana

@ref: 41147

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Bartonellaceae

genus: Bartonella

species: Bartonella quintana

strain designation: Toulouse

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no91.377
6948098.783negative
41147nonegativerod-shaped

colony morphology

@refincubation period
569193-5 days
41147

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41147MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
41147CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperature
41147positivegrowth37
56919positivegrowth37

Physiology and metabolism

oxygen tolerance

  • @ref: 56919
  • oxygen tolerance: microaerophile

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 92.88

halophily

@refsaltgrowthtested relationconcentration
41147NaClpositivegrowth0 %
41147NaClnogrowth2 %
41147NaClnogrowth4 %
41147NaClnogrowth6 %
41147NaClnogrowth8 %
41147NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
41147esculin-hydrolysis4853
41147hippurate-hydrolysis606565
41147nitrate-reduction17632
41147nitrite-reduction16301

metabolite production

  • @ref: 41147
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
4114715688acetoin-
4114717234glucose+

enzymes

@refvalueactivityec
41147oxidase+
41147beta-galactosidase+3.2.1.23
41147alcohol dehydrogenase-1.1.1.1
41147catalase-1.11.1.6
41147gamma-glutamyltransferase-2.3.2.2
41147lysine decarboxylase-4.1.1.18
41147ornithine decarboxylase-4.1.1.17
41147phenylalanine ammonia-lyase-4.3.1.24
41147tryptophan deaminase-
41147urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
41147--++-++-+------+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
41147-------------------------------------------------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typesampling dateisolation date
41147ToulouseFranceFRAEurope
56919ToulouseFranceFRAEuropeHuman blood1993
41147ToulouseFranceFRAEuropeHuman, Blood1993

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood

Safety information

risk assessment

  • @ref: 41147
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bartonella quintana CCUG 45777GCA_902810555contigncbi803
66792Bartonella quintana strain CCUG 45777803.7wgspatric803

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno98.783no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no87.589yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no84.638yes
69480spore-formingspore-formingAbility to form endo- or exosporesno92.88no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno93.334yes
69480flagellatedmotile2+Ability to perform flagellated movementno91.377no

External links

@ref: 41147

culture collection no.: CIP 103739, CCUG 45777

straininfo link

  • @ref: 95680
  • straininfo: 67570

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41147Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103739Collection of Institut Pasteur (CIP 103739)
56919Curators of the CCUGhttps://www.ccug.se/strain?id=45777Culture Collection University of Gothenburg (CCUG) (CCUG 45777)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
95680Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID67570.1