Strain identifier

BacDive ID: 138670

Type strain: Yes

Species: Gemella haemolysans

Strain Designation: Neisseria haemolysans

Strain history: CIP <- 1984, ATCC <- NCTC, Neisseria haemolysans <- T. Thjotta

NCBI tax ID(s): 546270 (strain), 1379 (species)

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General

@ref: 64667

BacDive-ID: 138670

DSM-Number: 107751

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, oval-shaped

description: Gemella haemolysans Neisseria haemolysans is an anaerobe, mesophilic, Gram-positive bacterium of the family Gemellaceae.

NCBI tax id

NCBI tax idMatching level
1379species
546270strain

strain history

@refhistory
64667<- CIP; CIP 101126 <- ATCC; ATCC 10379 <- NCTC; NCTC 12968 <- T. Thjotta; Neisseria haemolysans
40316CIP <- 1984, ATCC <- NCTC, Neisseria haemolysans <- T. Thjotta

doi: 10.13145/bacdive138670.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Gemellaceae
  • genus: Gemella
  • species: Gemella haemolysans
  • full scientific name: Gemella haemolysans (Thjøtta and Bøe 1938) Berger 1960 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Neisseria haemolysans

@ref: 64667

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanales, not assigned to family

genus: Gemella

species: Gemella haemolysans

full scientific name: Gemella haemolysans (Thjøtta and Bøe 1938) Berger 1960

strain designation: Neisseria haemolysans

type strain: yes

Morphology

cell morphology

  • @ref: 40316
  • gram stain: positive
  • cell shape: oval-shaped
  • motility: no

colony morphology

  • @ref: 40316
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64667COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
40316MEDIUM 9 - Brain heart infusion BHIyesDistilled water make up to (1000.000 ml);Brain heart infusion (37.000 g)
40316CIP Medium 38yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=38
40316CIP Medium 9yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=9
40316CIP Medium 253yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=253

culture temp

@refgrowthtypetemperaturerange
64667positivegrowth37mesophilic
40316positivegrowth37mesophilic
53999positivegrowth37mesophilic
40316positivegrowth25-37mesophilic
40316nogrowth10psychrophilic
40316nogrowth41thermophilic
40316nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
53999anaerobe
53999microaerophile
40316facultative anaerobe

halophily

  • @ref: 40316
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
40316esculin-hydrolysis4853
40316hippurate+hydrolysis606565
40316nitrate-reduction17632
40316nitrite-reduction16301
68377D-glucose+builds acid from17634
68377D-fructose+builds acid from15824
68377maltose+builds acid from17306
68377sucrose+builds acid from17992
68377ornithine-degradation18257
68377urea-hydrolysis16199
68377tryptophan-energy source27897

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6837735581indole-
4031615688acetoin-

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase+3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase+3.1.3.1
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
40316oxidase-
40316beta-galactosidase-3.2.1.23
40316alcohol dehydrogenase-1.1.1.1
40316catalase-1.11.1.6
40316gamma-glutamyltransferase-2.3.2.2
40316lysine decarboxylase-4.1.1.18
40316ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
40316-+++-+---+++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
40316----------+++-------------+/-+/---+--------+--------+

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
64667-++++--+/-+-+--

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_3679.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_238;96_1510;97_1802;98_2812;99_3679&stattab=map
  • Last taxonomy: Gemella haemolysans
  • 16S sequence: L14326
  • Sequence Identity:
  • Total samples: 60051
  • soil counts: 926
  • aquatic counts: 1263
  • animal counts: 57515
  • plant counts: 347

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
646672Risk group (German classification)
403161Risk group (French classification)

Sequence information

16S sequences

  • @ref: 64667
  • description: Gemella haemolysans ATCC 10379 16S ribosomal RNA gene, complete sequence
  • accession: L14326
  • length: 1537
  • database: ena
  • NCBI tax ID: 546270

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Gemella haemolysans ATCC 10379GCA_000173915contigncbi546270
66792Gemella haemolysans ATCC 10379546270.5wgspatric546270
66792Gemella haemolysans strain FDAARGOS_15001379.125completepatric1379
66792Gemella haemolysans ATCC 10379645058834draftimg546270
66792Gemella haemolysans strain FDAARGOS_15001379.126completepatric1379
66792Gemella haemolysans strain FDAARGOS_15001379.128completepatric1379
66792Gemella haemolysans strain FDAARGOS_15001379.127completepatric1379

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno95.463no
gram-positiveyes92.047no
anaerobicno84.535no
halophileyes80.929no
spore-formingno91.545no
thermophileno99.541no
glucose-utilyes80.573no
aerobicno94.664yes
flagellatedno97.093no
glucose-fermentyes78.864no

External links

@ref: 64667

culture collection no.: CIP 101126, ATCC 10379, NCTC 12968, CCUG 37985, DSM 107751, LMG 18984

straininfo link

  • @ref: 95346
  • straininfo: 12948

literature

  • topic: Phylogeny
  • Pubmed-ID: 24664577
  • title: Gemella parahaemolysans sp. nov. and Gemella taiwanensis sp. nov., isolated from human clinical specimens.
  • authors: Hung WC, Chen HJ, Tsai JC, Tseng SP, Lee TF, Hsueh PR, Shieh WY, Teng LJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.052795-0
  • year: 2014
  • mesh: Aged, Aged, 80 and over, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Female, Gemella/*classification/genetics/isolation & purification, Genes, Bacterial, Humans, Male, Middle Aged, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Taiwan
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
40316Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20101126Collection of Institut Pasteur (CIP 101126)
53999Curators of the CCUGhttps://www.ccug.se/strain?id=37985Culture Collection University of Gothenburg (CCUG) (CCUG 37985)
64667Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107751Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107751)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
95346Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID12948.1