Strain identifier
BacDive ID: 138328
Type strain: 
Species: Ureaplasma canigenitalium
Strain Designation: D6P-C
Strain history: CIP <- 1999, R. Harasawa, Animal Cent. Biomed. Res., Fac. Medicine, Tokyo Univ., Tokyo, Japan: strain D6P-C <- H. Kotani
NCBI tax ID(s): 1408476 (strain), 42092 (species)
version 8.1 (current version)
General
@ref: 39463
BacDive-ID: 138328
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Ureaplasma canigenitalium D6P-C is a mesophilic, Gram-negative bacterium of the family Mycoplasmoidaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1408476 | strain |
| 42092 | species |
strain history
- @ref: 39463
- history: CIP <- 1999, R. Harasawa, Animal Cent. Biomed. Res., Fac. Medicine, Tokyo Univ., Tokyo, Japan: strain D6P-C <- H. Kotani
doi: 10.13145/bacdive138328.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmoidales
- family: Mycoplasmoidaceae
- genus: Ureaplasma
- species: Ureaplasma canigenitalium
- full scientific name: Ureaplasma canigenitalium Harasawa et al. 1993
@ref: 39463
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmatales
family: Mycoplasmataceae
genus: Ureaplasma
species: Ureaplasma canigenitalium
strain designation: D6P-C
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | negative | 99.681 | |
| 39463 | no |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 39463 | MEDIUM 80 - for Ureaplasma urealyticum | yes | Distilled water make up to (740.000 ml);Trypto casein soy broth (24.000 g);Yeast extract solution 25 % - M00263 (20.000 ml);0.1 % Phenol red - M00387 (20.000 ml);Sterile supplement - M00270 (220.000 ml) | |
| 39463 | CIP Medium 80 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=80 |
culture temp
- @ref: 39463
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.994 |
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type | isolation date |
|---|---|---|---|---|---|---|
| 39463 | Tokyo | Japan | JPN | Asia | ||
| 39463 | Tokyo | Japan | JPN | Asia | Animal, Dog | 1978 |
Safety information
risk assessment
- @ref: 39463
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ureaplasma canigenitalium ATCC 51252 | GCA_000712165 | scaffold | ncbi | 1408476 |
| 66792 | Ureaplasma canigenitalium ATCC 51252 | 1408476.3 | wgs | patric | 1408476 |
| 66792 | Ureaplasma canigenitalium ATCC 51252 | 2565956531 | draft | img | 1408476 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 92.586 | no |
| flagellated | no | 97.479 | no |
| gram-positive | no | 50.537 | no |
| anaerobic | no | 93.917 | no |
| halophile | no | 52.86 | no |
| spore-forming | no | 98.107 | no |
| thermophile | no | 96.054 | no |
| glucose-util | yes | 84 | no |
| aerobic | no | 95.669 | no |
| glucose-ferment | yes | 71.475 | no |
External links
@ref: 39463
culture collection no.: CIP 106087, ATCC 51252
straininfo link
- @ref: 95085
- straininfo: 42878
literature
- topic: Phylogeny
- Pubmed-ID: 8240947
- title: Ureaplasma canigenitalium sp. nov., isolated from dogs.
- authors: Harasawa R, Imada Y, Kotani H, Koshimizu K, Barile MF
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-43-4-640
- year: 1993
- mesh: Animals, Cell Division/drug effects, Cholesterol/pharmacology, Cross Reactions, DNA, Bacterial, Dogs/*microbiology, Male, Mouth/microbiology, Nasal Cavity/microbiology, Nucleic Acid Hybridization, Penis/microbiology, Serotyping, Ureaplasma/*classification/immunology/isolation & purification/ultrastructure
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 39463 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106087 | Collection of Institut Pasteur (CIP 106087) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 95085 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID42878.1 |