Ureaplasma canigenitalium (CIP 106087, ATCC 51252, D6P-C)

Name: Ureaplasma canigenitalium (CIP 106087, ATCC 51252, D6P-C)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 138328

Type strain

Strain Designation D6P-C

Culture col. no. CIP 106087 ATCC 51252 D6P-C

NCBI tax ID(s) 1408476 42092

Special Collections CIP

History CIP <- 1999, R. Harasawa, Animal Cent. Biomed. Res., Fac. Medicine, Tokyo Univ., Tokyo, Japan: strain D6P-C <- H. Kotani

Links

Ureaplasma canigenitalium D6P-C is a bacterium of the family Mycoplasmoidaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 42878

ATCC 51252,CIP 106087

@ref 20215

Last LPSN update 2026-05-29 08:39:14

Domain Bacteria

Phylum Mycoplasmatota

Class Mollicutes

Order Mycoplasmoidales

Family Mycoplasmoidaceae

Genus Ureaplasma

Species Ureaplasma canigenitalium

Full scientific name Ureaplasma canigenitalium Harasawa et al. 1993

Morphology

Cell morphology

@ref	Confidence	Gram stain
39463
125438	93.555
125439	99.665	negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
39463	MEDIUM 80 - for Ureaplasma urealyticum		Distilled water make up to (740.000 ml);Trypto casein soy broth (24.000 g);Yeast extract solution 25 % - M00263 (20.000 ml);0.1 % Phenol red - M00387 (20.000 ml);Sterile supplement - M00270 (220.000 ml)
39463	CIP Medium 80			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
39463	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	97.36

Spore formation

@ref	Spore formation	Confidence
125438		95.305
125439		99.93

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
39463		Tokyo	Japan	JPN	Asia
39463	Animal, Dog	Tokyo	Japan	JPN	Asia	1978

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
39463	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM71216v1 assembly for Ureaplasma canigenitalium ATCC 51252	scaffold	GCA_000712165	1408476.3	2565956531	1408476	73.37

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Ureaplasma canigenitalium 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY744937	927		42092

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM71216v1 assembly for Ureaplasma canigenitalium ATCC 51252
BV-BRC: 1408476.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	97.36	no
125439	gram_stain	BacteriaNetⓘ	negative	99.67	no
125439	spore_formation	BacteriaNetⓘ	no	99.93	no
125439	motility	BacteriaNetⓘ	yes	42.39	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ureaplasma canigenitalium ATCC 51252 ATCC 51252
NCBI: GCA_000712165.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	63.85	no
125438	anaerobic	anaerobicⓘ	no	82.51	no
125438	aerobic	aerobicⓘ	no	85.18	no
125438	spore-forming	spore-formingⓘ	no	95.31	no
125438	thermophilic	thermophileⓘ	no	95.21	no
125438	flagellated	motile2+ⓘ	no	93.56	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Molecular cloning and characterization of three beta-defensins from canine testes.	Sang Y, Ortega MT, Blecha F, Prakash O, Melgarejo T.	Infect Immun	10.1128/iai.73.5.2611-2620.2005	2005
Phylogeny	Ureaplasma canigenitalium sp. nov., isolated from dogs.	Harasawa R, Imada Y, Kotani H, Koshimizu K, Barile MF	Int J Syst Bacteriol	10.1099/00207713-43-4-640	1993

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39463	Collection of Institut Pasteur ; Curators of the CIP; CIP 106087
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ureaplasma canigenitalium (CIP 106087, ATCC 51252, D6P-C)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000712165

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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