Strain identifier

BacDive ID: 138222

Type strain: Yes

Species: Helicobacter salomonis

Strain Designation: Inkinen

Strain history: CIP <- 1998, K. Jalava, Faculty Veterinary Medicine, Helsinki Univ., Helsinki, Finland: strain Inkinen

NCBI tax ID(s): 56878 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 39327

BacDive-ID: 138222

keywords: genome sequence, Bacteria, mesophilic, Gram-negative

description: Helicobacter salomonis Inkinen is a mesophilic, Gram-negative bacterium of the family Helicobacteraceae.

NCBI tax id

  • NCBI tax id: 56878
  • Matching level: species

strain history

@refhistory
393271998, K. Jalava, Fac. Vet. Medicine, Univ. Helsinki, Finland: strain Inkinen
39327CIP <- 1998, K. Jalava, Faculty Veterinary Medicine, Helsinki Univ., Helsinki, Finland: strain Inkinen

doi: 10.13145/bacdive138222.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Helicobacteraceae
  • genus: Helicobacter
  • species: Helicobacter salomonis
  • full scientific name: Helicobacter salomonis Jalava et al. 1997

@ref: 39327

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Helicobacteraceae

genus: Helicobacter

species: Helicobacter salomonis

strain designation: Inkinen

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.989
39327negativerod-shapedyes

colony morphology

  • @ref: 39327

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39327MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
39327Brucella brothno
39327CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

  • @ref: 39327
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no93
69480no99.998

halophily

  • @ref: 39327
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
39327606565hippurate-hydrolysis
3932717632nitrate+reduction
3932716301nitrite-reduction

metabolite production

  • @ref: 39327
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
39327oxidase+
39327gelatinase-
39327catalase+1.11.1.6
39327urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39327--++------++---+----

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
39327HelsinkiFinlandFINEurope
39327HelsinkiFinlandFINEuropeAnimal, Canine, gastric mucosa1994

Safety information

risk assessment

  • @ref: 39327
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Helicobacter salomonis CIP 105607GCA_017979425contigncbi56878
66792Helicobacter salomonis strain CIP 10560756878.15wgspatric56878

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno93no
gram-positiveno98.481no
anaerobicno87.646no
halophileno87.228no
spore-formingno95.876no
glucose-utilno70.705no
thermophileyes54.573yes
flagellatedno66.895no
motileyes88.142no
aerobicno94.945no
glucose-fermentno83.634no

External links

@ref: 39327

culture collection no.: CIP 105607, CCUG 37845

straininfo link

  • @ref: 94992
  • straininfo: 54678

literature

  • topic: Phylogeny
  • Pubmed-ID: 9336895
  • title: Helicobacter salomonis sp. nov., a canine gastric Helicobacter sp. related to Helicobacter felis and Helicobacter bizzozeronii.
  • authors: Jalava K, Kaartinen M, Utriainen M, Happonen I, Hanninen ML
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-47-4-975
  • year: 1997
  • mesh: Animals, DNA, Bacterial/*analysis, Dog Diseases/*microbiology, Dogs, Helicobacter/*classification/drug effects/*genetics/growth & development, Helicobacter Infections/microbiology/*veterinary, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39327Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105607Collection of Institut Pasteur (CIP 105607)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
94992Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID54678.1