Helicobacter salomonis (CIP 105607, CCUG 37845, Inkinen)

Name: Helicobacter salomonis (CIP 105607, CCUG 37845, Inkinen)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 138222

Type strain

Strain Designation Inkinen

Culture col. no. CIP 105607 CCUG 37845 Inkinen

NCBI tax ID(s) 56878

Special Collections CCUG CIP

History CIP <- 1998, K. Jalava, Fac. Vet. Medicine, Univ. Helsinki, Finland: strain Inkinen CIP <- 1998, K. Jalava, Faculty Veterinary Medicine, Helsinki Univ., Helsinki, Finland: strain Inkinen

Links

Helicobacter salomonis Inkinen is a Gram-negative, motile, rod-shaped bacterium of the family Helicobacteraceae.

Gram-negative motile rod-shaped genome sequence Bacteria

Name and taxonomic classification

SI-ID 54678

CCUG 37845,CIP 105607

@ref 20215

Last LPSN update 2026-05-29 08:39:12

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Helicobacteraceae

Genus Helicobacter

Species Helicobacter salomonis

Full scientific name Helicobacter salomonis Jalava et al. 1997

BacDive ID	Other strains from **Helicobacter salomonis** (1)	Type strain
150016	H. salomonis CCUG 38845

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
39327	negative	rod-shaped
125438	negative			95.984

Colony morphology

39327

Hemolysis ability0

Culture and growth conditions

Culture medium

@ref	Name	Composition	Medium link
39327	MEDIUM 6 - Columbia agar with 10 % horse blood	Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
39327	CIP Medium 6		Medium recipe at CIP
39327	Brucella broth

Culture temp

@ref	Growth	Type	Temperature (°C)
39327	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.381
125438		96.058

Halophily

@ref	Salt	Growth	Tested relation	Concentration
39327	NaCl		growth	3.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
39327	606565 ChEBI	hippurate	-	hydrolysis
39327	17632 ChEBI	nitrate	+	reduction
39327	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
39327	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
39327	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
39327	gelatinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
39327	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
39327	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
39327	-	-	+	+	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
39327		Helsinki	Finland	FIN	Europe
39327	Animal, Canine, gastric mucosa	Helsinki	Finland	FIN	Europe	1994

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
39327	2	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1797942v1 assembly for Helicobacter salomonis CIP 105607	contig	GCA_017979425	56878.15	8007008155	56878	54.51

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1797942v1 assembly for Helicobacter salomonis CIP 105607
BV-BRC: 56878.15

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	80.44	no
125439	motility	BacteriaNetⓘ	no	77.71	no
125439	gram_stain	BacteriaNetⓘ	negative	84.72	no
125439	spore_formation	BacteriaNetⓘ	no	99.38	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Helicobacter salomonis strain CIP 105607
PATRIC: 56878.15

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.98	no
125438	anaerobic	anaerobicⓘ	no	74.47	no
125438	spore-forming	spore-formingⓘ	no	96.06	no
125438	aerobic	aerobicⓘ	no	84.10	no
125438	thermophilic	thermophileⓘ	no	80.86	yes
125438	flagellated	motile2+ⓘ	no	55.35	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Diagnosis of Genus Helicobacter through a hemi-nested PCR assay of 16S rRNA.	Qin H, Tang G, Yi P, Pan X, Huang H, Chang R, Shi Z, Ashraf MA.	Saudi Pharm J	10.1016/j.jsps.2016.04.015	2016
	A mixed population of Helicobacter pylori, Helicobacter bizzozeronii and "Helicobacter heilmannii" in the gastric mucosa of a domestic cat.	Canejo-Teixeira R, Oliveira M, Pissarra H, Niza MM, Vilela CL.	Ir Vet J	10.1186/2046-0481-67-25	2014
Enzymology	Characterization of a culturable "Gastrospirillum hominis" (Helicobacter heilmannii) strain isolated from human gastric mucosa.	Andersen LP, Boye K, Blom J, Holck S, Norgaard A, Elsborg L.	J Clin Microbiol	10.1128/jcm.37.4.1069-1076.1999	1999
	Helicobacter felis infection is associated with lymphoid follicular hyperplasia and mild gastritis but normal gastric secretory function in cats.	Simpson KW, Strauss-Ayali D, Scanziani E, Straubinger RK, McDonough PL, Straubinger AF, Chang YF, Domeneghini C, Arebi N, Calam J.	Infect Immun	10.1128/iai.68.2.779-790.2000	2000
Phylogeny	Helicobacter salomonis sp. nov., a canine gastric Helicobacter sp. related to Helicobacter felis and Helicobacter bizzozeronii.	Jalava K, Kaartinen M, Utriainen M, Happonen I, Hanninen ML	Int J Syst Bacteriol	10.1099/00207713-47-4-975	1997

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39327	Collection of Institut Pasteur ; Curators of the CIP; CIP 105607
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Helicobacter salomonis (CIP 105607, CCUG 37845, Inkinen)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_017979425

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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