Name: Helicobacter salomonis Inkinen
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 138222

Type strain:

Species: Helicobacter salomonis

Strain Designation: Inkinen

Culture col. no.: CIP 105607, CCUG 37845

Strain history: CIP <- 1998, K. Jalava, Faculty Veterinary Medicine, Helsinki Univ., Helsinki, Finland: strain Inkinen

NCBI tax ID(s): 56878 (species)

SI-ID 54678

CCUG 37845, CIP 105607

Other strains from Helicobacter salomonis

H. salomonis CCUG 38845

Section

Helicobacter salomonis Inkinen is a mesophilic, Gram-negative bacterium of the family Helicobacteraceae.

Gram-negative
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Helicobacteraceae*
	Genus	*Helicobacter*
	Species	**Helicobacter salomonis**
	Full Scientific Name (LPSN)	Helicobacter salomonis Jalava et al. 1997

Information on morphological and physiological properties Morphology

[Ref.: #39327]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.989

[Ref.: #39327]	Cell shape	rod-shaped

[Ref.: #39327]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #39327]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

CIP Medium 6

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

Brucella broth

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #39327]			growth	37 °C

[Ref.: #39327]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %93
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #39327]		NaCl	no	growth	3.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #39327]	hippurate ChEBI	-	hydrolysis
[Ref.: #39327]	nitrate ChEBI	+	reduction
[Ref.: #39327]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #39327]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #39327]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #39327]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #39327]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #39327]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #39327]	8838	-	-	+	+	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #39327]	Sample type/isolated from	Animal, Canine, gastric mucosa
[Ref.: #39327]	Geographic location (country and/or sea, region)	Helsinki
[Ref.: #39327]	Country	Finland
[Ref.: #39327]	Country ISO 3 Code	FIN
[Ref.: #39327]	Continent	Europe
[Ref.: #39327]	Isolation date	1994

[Ref.: #39327]	Geographic location (country and/or sea, region)	Helsinki
[Ref.: #39327]	Country	Finland
[Ref.: #39327]	Country ISO 3 Code	FIN
[Ref.: #39327]	Continent	Europe
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #39327]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Helicobacter salomonis CIP 105607	GCA_017979425	contig	GenBank	56878 tax ID	*
[Ref.: #66792]	Helicobacter salomonis strain CIP 105607	56878.15	wgs	PATRIC	56878 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Helicobacter salomonis strain CIP 105607 PATRIC: 56878.15
[Ref.: #69481]	spore-forming	no	93	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Helicobacter salomonis strain CIP 105607 PATRIC: 56878.15
[Ref.: #69480]	gram-positive	no	98.481	no
[Ref.: #69480]	anaerobic	no	87.646	no
[Ref.: #69480]	halophile	no	87.228	no
[Ref.: #69480]	spore-forming	no	95.876	no
[Ref.: #69480]	glucose-util	no	70.705	no
[Ref.: #69480]	thermophile	yes	54.573	yes
[Ref.: #69480]	flagellated	no	66.895	no
[Ref.: #69480]	motile	yes	88.142	no
[Ref.: #69480]	aerobic	no	94.945	no
[Ref.: #69480]	glucose-ferment	no	83.634	no

Availability in culture collections External links

[Ref.: #39327]

Culture collection no.

CIP 105607, CCUG 37845

[Ref.: #94992]

SI-ID 54678

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Helicobacter salomonis sp. nov., a canine gastric Helicobacter sp. related to Helicobacter felis and Helicobacter bizzozeronii.	Jalava K, Kaartinen M, Utriainen M, Happonen I, Hanninen ML	Int J Syst Bacteriol	10.1099/00207713-47-4-975	1997	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39327 Collection of Institut Pasteur ; Curators of the CIP; CIP 105607

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#94992

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID54678.1 )

* These data were automatically processed and therefore are not curated

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Helicobacter salomonis strain CIP 105607

Helicobacter salomonis strain CIP 105607

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