Strain identifier

BacDive ID: 137693

Type strain: Yes

Species: Facklamia ignava

Strain Designation: 164/97

Strain history: CIP <- 1998, CCUG <- 1997, M.D. Collins, IFR, Reading, UK: strain 164/97 <- R.R. Facklam, CDC, Atlanta, Georgia, USA <- M. Lovgren, Edmonton, Alberta, Canada

NCBI tax ID(s): 137730 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 38565

BacDive-ID: 137693

keywords: genome sequence, Bacteria, facultative anaerobe, mesophilic

description: Facklamia ignava 164/97 is a facultative anaerobe, mesophilic bacterium of the family Aerococcaceae.

NCBI tax id

  • NCBI tax id: 137730
  • Matching level: species

strain history

  • @ref: 38565
  • history: CIP <- 1998, CCUG <- 1997, M.D. Collins, IFR, Reading, UK: strain 164/97 <- R.R. Facklam, CDC, Atlanta, Georgia, USA <- M. Lovgren, Edmonton, Alberta, Canada

doi: 10.13145/bacdive137693.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Aerococcaceae
  • genus: Facklamia
  • species: Facklamia ignava
  • full scientific name: Facklamia ignava Collins et al. 1998

  • synonyms

    • @ref: 20215
    • synonym: Falseniella ignava

@ref: 38565

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Aerococcaceae

genus: Facklamia

species: Facklamia ignava

strain designation: 164/97

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no95.255
69480100positive
38565nopositivecoccus-shaped

colony morphology

  • @ref: 38565
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38565MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
38565CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
38565positivegrowth37mesophilic
38565positivegrowth25-41
38565nogrowth10psychrophilic
38565nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 38565
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no98
69480no99.995

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
385654853esculin-hydrolysis
38565606565hippurate+hydrolysis
3856517632nitrate-reduction
3856516301nitrite-reduction

metabolite tests

  • @ref: 38565
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
38565oxidase-
38565beta-galactosidase+3.2.1.23
38565alcohol dehydrogenase-1.1.1.1
38565catalase-1.11.1.6
38565gamma-glutamyltransferase-2.3.2.2
38565lysine decarboxylase-4.1.1.18
38565ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38565--++-+-----+---+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
38565---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
38565CanadaCANNorth America
53658CanadaCANNorth AmericaHuman blood,82-year-old woman
38565CanadaCANNorth AmericaHuman, Blood

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Blood
#Host#Human#Female

Safety information

risk assessment

  • @ref: 38565
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Falseniella ignava CCUG 37419GCA_000301055scaffoldncbi883112
66792Facklamia ignava CCUG 37419883112.3wgspatric883112
66792Facklamia ignava CCUG 374192531839287draftimg883112

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno98no
motileno94.834no
flagellatedno97.659no
gram-positiveyes94.212no
anaerobicno88.283no
aerobicno94.774no
halophileyes87.507no
spore-formingno96.006no
glucose-utilyes85.79no
thermophileno96.411no
glucose-fermentyes72.88no

External links

@ref: 38565

culture collection no.: CCM 4932, CIP 105583, CCUG 37419, ATCC 700631

straininfo link

  • @ref: 94528
  • straininfo: 12945

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny9650988Facklamia ignava sp. nov., isolated from human clinical specimens.Collins MD, Lawson PA, Monasterio R, Falsen E, Sjoden B, Facklam RRJ Clin Microbiol10.1128/JCM.36.7.2146-2148.19981998Aged, Aged, 80 and over, Bacillaceae/*classification/*isolation & purification, Bacillaceae Infections/*microbiology, DNA, Bacterial/analysis, Electrophoresis, Polyacrylamide Gel, Female, Humans, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, rRNA OperonEnzymology
Phylogeny34181136Reclassification of Facklamia ignava, Facklamia sourekii and Facklamia tabacinasalis as Falseniella ignava gen. nov., comb. nov., Hutsoniella sourekii gen. nov., comb. nov., and Ruoffia tabacinasalis gen. nov., comb. nov., and description of Ruoffia halotolerans sp. nov., isolated from hypersaline Inland Sea of Qatar.Fotedar R, Sankaranarayanan K, Caldwell ME, Zeyara A, Al Malki A, Kaul R, Al Shamari H, Ali M, Al Marri M, Lawson PAAntonie Van Leeuwenhoek10.1007/s10482-021-01587-72021*Aerococcaceae, Bacterial Typing Techniques, DNA, Bacterial/genetics, Phospholipids/analysis, Phylogeny, Qatar, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38565Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105583Collection of Institut Pasteur (CIP 105583)
53658Curators of the CCUGhttps://www.ccug.se/strain?id=37419Culture Collection University of Gothenburg (CCUG) (CCUG 37419)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
94528Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID12945.1