Strain identifier

BacDive ID: 137411

Type strain: Yes

Species: Levilactobacillus parabrevis

Strain history: CIP <- 2009, BCCM/LMG <- 1922, ATCC as Lactobacillus brevis <- M. Spiller as Sporolactobacillus sp. RODS-DW, Spiller SLB-MAS

NCBI tax ID(s): 357278 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 37888

BacDive-ID: 137411

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic

description: Levilactobacillus parabrevis CIP 109963 is a facultative anaerobe, mesophilic bacterium that was isolated from Wheat.

NCBI tax id

  • NCBI tax id: 357278
  • Matching level: species

strain history

@refhistory
67770LMG 11984 <-- ATCC 53295 (Lactobacillus brevis) <-- M. A. Spiller; RODS-DW, SLB-MAS (Sporolactobacillus sp.).
37888CIP <- 2009, BCCM/LMG <- 1922, ATCC as Lactobacillus brevis <- M. Spiller as Sporolactobacillus sp. RODS-DW, Spiller SLB-MAS

doi: 10.13145/bacdive137411.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Levilactobacillus
  • species: Levilactobacillus parabrevis
  • full scientific name: Levilactobacillus parabrevis (Vancanneyt et al. 2006) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus parabrevis

@ref: 37888

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus parabrevis

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no97.736
69480100positive
37888nopositiverod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37888MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
37888CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
37888positivegrowth37mesophilic
67770positivegrowth28mesophilic
37888positivegrowth15-37
37888nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 37888
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3788817632nitrate-reduction
3788816301nitrite-reduction
3788817632nitrate+respiration

metabolite production

  • @ref: 37888
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 37888
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
37888oxidase-
37888alcohol dehydrogenase-1.1.1.1
37888catalase-1.11.1.6
37888lysine decarboxylase-4.1.1.18
37888ornithine decarboxylase+4.1.1.17
37888urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
37888--++-++---++--++++--

Isolation, sampling and environmental information

isolation

@refsample type
67770Wheat
37888Food, Wheat

taxonmaps

  • @ref: 69479
  • File name: preview.99_1489.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_484;97_553;98_1175;99_1489&stattab=map
  • Last taxonomy: Levilactobacillus
  • 16S sequence: AM158249
  • Sequence Identity:
  • Total samples: 406
  • soil counts: 53
  • aquatic counts: 28
  • animal counts: 264
  • plant counts: 61

Safety information

risk assessment

  • @ref: 37888
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Lactobacillus parabrevis 16S rRNA gene, type strain LMG 11984T
  • accession: AM158249
  • length: 1518
  • database: ena
  • NCBI tax ID: 357278

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Levilactobacillus parabrevis ATCC 53295 RODS-DWGCA_000383435scaffoldncbi1267003
66792Levilactobacillus parabrevis LMG 11984GCA_001437515scaffoldncbi357278
66792Lactobacillus parabrevis ATCC 532951267003.4wgspatric1267003
66792Lactobacillus parabrevis ATCC 532951267003.3wgspatric1267003
66792Lactobacillus parabrevis strain LMG 11984357278.3wgspatric357278
66792Levilactobacillus parabrevis ATCC 532952657245447draftimg1267003
66792Lactobacillus parabrevis ATCC 532952519103178draftimg1267003
66792Levilactobacillus parabrevis LMG 119842667527803draftimg357278
67770Levilactobacillus parabrevis ATCC 53295GCA_001434055contigncbi1267003

GC content

@refGC-contentmethod
6777049high performance liquid chromatography (HPLC)
6777049.1genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.51no
flagellatedno98.751no
gram-positiveyes95.658no
anaerobicno89.683no
aerobicno94.665no
halophileyes90.106no
spore-formingno94.666no
thermophileno99.482yes
glucose-utilyes91.735no
glucose-fermentyes85.859no

External links

@ref: 37888

culture collection no.: CIP 109963, LMG 11984, ATCC 53295, JCM 30911, BCRC 81080

straininfo link

  • @ref: 94314
  • straininfo: 3232

literature

  • topic: Phylogeny
  • Pubmed-ID: 35834933
  • title: Characterization of two novel pentose-fermenting and GABA-producing species: Levilactobacillus tujiorum sp. nov. and Secundilactobacillus angelensis sp. nov. Isolated from a solid-state fermented zha-chili.
  • authors: Zhang Z, Wang Y, Dong Y, Xiang F, Zhang Y, Zhang H, Sun Y, Guo Z
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2022.126344
  • year: 2022
  • mesh: Bacterial Typing Techniques, Base Composition, Carbon, *Cardiolipins, Catalase/genetics, DNA, Bacterial/genetics, Fatty Acids/analysis, Glycolipids, Nucleic Acid Hybridization, *Pentoses, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, gamma-Aminobutyric Acid/genetics
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
37888Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109963Collection of Institut Pasteur (CIP 109963)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
94314Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID3232.1