Name: Levilactobacillus parabrevis CIP 109963
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 137411

Type strain:

Species: Levilactobacillus parabrevis

Culture col. no.: CIP 109963, LMG 11984, ATCC 53295, JCM 30911, BCRC 81080

Strain history: CIP <- 2009, BCCM/LMG <- 1922, ATCC as Lactobacillus brevis <- M. Spiller as Sporolactobacillus sp. RODS-DW, Spiller SLB-MAS

NCBI tax ID(s): 357278 (species)

SI-ID 3232

LMG 11984, ATCC 53295, CIP 109963, JCM 30911

Section

Levilactobacillus parabrevis CIP 109963 is a facultative anaerobe, mesophilic bacterium that was isolated from Wheat.

facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Levilactobacillus*
	Species	**Levilactobacillus parabrevis**
	Full Scientific Name (LPSN)	Levilactobacillus parabrevis (Vancanneyt et al. 2006) Zheng et al. 2020

Synonym

Lactobacillus parabrevis

Information on morphological and physiological properties Morphology

[Ref.: #37888]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #37888]	Cell shape	rod-shaped

[Ref.: #37888]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %97.736

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37888]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #37888]

Culture medium growth

[Ref.: #37888]

Culture medium composition

expand / minimize

[Ref.: #37888]

Culture medium

CIP Medium 40

[Ref.: #37888]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #37888]		growth	37 °C
[Ref.: #37888]		growth	15-37 °C
[Ref.: #37888]	no	growth	45 °C
[Ref.: #67770]		growth	28 °C

[Ref.: #37888]	Temperature range	mesophilic
[Ref.: #37888]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #37888]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #37888]	nitrate ChEBI	-	reduction
[Ref.: #37888]	nitrate ChEBI	+	respiration
[Ref.: #37888]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #37888]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #37888]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #37888]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #37888]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #37888]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #37888]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #37888]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #37888]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #37888]	12259	-	-	+	+	-	+	+	-	-	-	+	+	-	-	+	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Wheat

[Ref.: #37888]	Sample type/isolated from	Food, Wheat
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AM158249 (>99% sequence identity) for Levilactobacillus from Microbeatlas

Aquatic Samples	28
Soil Samples	53
Animal Samples	264
Plant Samples	61
Total Samples	406

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #37888]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus parabrevis 16S rRNA gene, type strain LMG 11984T	AM158249	1518	ENA	357278 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Levilactobacillus parabrevis ATCC 53295	GCA_001434055	contig	GenBank	1267003 tax ID
[Ref.: #66792]	Levilactobacillus parabrevis LMG 11984	GCA_001437515	scaffold	GenBank	357278 tax ID	*
[Ref.: #66792]	Lactobacillus parabrevis ATCC 53295	1267003.4	wgs	PATRIC	1267003 tax ID	*
[Ref.: #66792]	Lactobacillus parabrevis ATCC 53295	1267003.3	wgs	PATRIC	1267003 tax ID	*
[Ref.: #66792]	Lactobacillus parabrevis strain LMG 11984	357278.3	wgs	PATRIC	357278 tax ID	*
[Ref.: #66792]	Levilactobacillus parabrevis ATCC 53295	2657245447	draft	JGI IMG/M	1267003 tax ID	*

[Ref.: #67770]	GC-content	49 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	49.1 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Levilactobacillus parabrevis LMG 11984 NCBI: GCA_001437515.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Levilactobacillus parabrevis ATCC 53295 RODS-DW NCBI: GCA_000383435.1
[Ref.: #69480]	motile	no	94.51	no
[Ref.: #69480]	flagellated	no	98.751	no
[Ref.: #69480]	gram-positive	yes	95.658	no
[Ref.: #69480]	anaerobic	no	89.683	no
[Ref.: #69480]	aerobic	no	94.665	no
[Ref.: #69480]	halophile	yes	90.106	no
[Ref.: #69480]	spore-forming	no	94.666	no
[Ref.: #69480]	thermophile	no	99.482	yes
[Ref.: #69480]	glucose-util	yes	91.735	no
[Ref.: #69480]	glucose-ferment	yes	85.859	no

Availability in culture collections External links

[Ref.: #37888]

Culture collection no.

CIP 109963, LMG 11984, ATCC 53295, JCM 30911, BCRC 81080

[Ref.: #94314]

SI-ID 3232

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of two novel pentose-fermenting and GABA-producing species: Levilactobacillus tujiorum sp. nov. and Secundilactobacillus angelensis sp. nov. Isolated from a solid-state fermented zha-chili.	Zhang Z, Wang Y, Dong Y, Xiang F, Zhang Y, Zhang H, Sun Y, Guo Z	Syst Appl Microbiol	10.1016/j.syapm.2022.126344	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37888 Collection of Institut Pasteur ; Curators of the CIP; CIP 109963

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#94314

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3232.1 )

* These data were automatically processed and therefore are not curated

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Levilactobacillus parabrevis LMG 11984

Levilactobacillus parabrevis ATCC 53295 RODS-DW

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