Strain identifier
BacDive ID: 137052
Type strain: 
Species: Alloprevotella tannerae
Strain history: CCUG 34292 <-- ATCC 51259 <-- L. V. Moore VPI N14B-15.
NCBI tax ID(s): 626522 (strain), 76122 (species)
version 8.1 (current version)
General
@ref: 36897
BacDive-ID: 137052
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Alloprevotella tannerae CIP 104476 is an anaerobe, mesophilic bacterium of the family Prevotellaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 626522 | strain |
| 76122 | species |
strain history
- @ref: 67770
- history: CCUG 34292 <-- ATCC 51259 <-- L. V. Moore VPI N14B-15.
doi: 10.13145/bacdive137052.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Prevotellaceae
- genus: Alloprevotella
- species: Alloprevotella tannerae
- full scientific name: Alloprevotella tannerae (Moore et al. 1994) Downes et al. 2013
synonyms
- @ref: 20215
- synonym: Prevotella tannerae
@ref: 36897
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Prevotellaceae
genus: Alloprevotella
species: Alloprevotella tannerae
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 93.094 | |
| 69480 | 99.999 | negative |
colony morphology
- @ref: 52037
- incubation period: 7 days
Culture and growth conditions
culture medium
- @ref: 36897
- name: MEDIUM 20 - for Anaerobic bacteria
- growth: yes
- composition: Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 36897 | positive | growth | 37 | mesophilic |
| 52037 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 52037 | anaerobe | |
| 69480 | anaerobe | 99.475 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.999 |
Isolation, sampling and environmental information
isolation
| @ref | country | origin.country | continent | sample type |
|---|---|---|---|---|
| 36897 | USA | USA | North America | |
| 52037 | USA | USA | North America | Human gingival crevice of adult with gingivitis |
| 67770 | Human gingival crevice |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Oral cavity and airways | #Gingiva |
| #Host Body-Site | #Oral cavity and airways | #Tooth |
| #Host | #Human | |
| #Infection | #Inflammation |
taxonmaps
- @ref: 69479
- File name: preview.99_5278.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15794;96_2564;97_3133;98_3935;99_5278&stattab=map
- Last taxonomy: Alloprevotella tannerae subclade
- 16S sequence: AB971822
- Sequence Identity:
- Total samples: 5358
- soil counts: 53
- aquatic counts: 71
- animal counts: 5204
- plant counts: 30
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Alloprevotella tannerae gene for 16S ribosomal RNA, partial sequence, strain: JCM 16135 | AB971822 | 1492 | ena | 76122 |
| 67770 | Prevotella tannerae 16S rRNA gene, strain ATCC 51259 | AJ005634 | 1453 | ena | 626522 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Prevotella tannerae ATCC 51259 | 626522.3 | wgs | patric | 626522 |
| 66792 | Alloprevotella tannerae ATCC 51259 | 645951840 | draft | img | 626522 |
| 67770 | Alloprevotella tannerae ATCC 51259 | GCA_000159995 | scaffold | ncbi | 626522 |
GC content
- @ref: 67770
- GC-content: 45
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 97.366 | no |
| anaerobic | yes | 98.78 | no |
| halophile | no | 83.75 | no |
| spore-forming | no | 96.34 | no |
| glucose-util | yes | 81.645 | no |
| flagellated | no | 96.995 | no |
| aerobic | no | 99.09 | yes |
| thermophile | no | 95.035 | yes |
| motile | no | 91.683 | no |
| glucose-ferment | yes | 51.302 | no |
External links
@ref: 36897
culture collection no.: CIP 104476, ATCC 51259, JCM 13994, CCUG 34292, JCM 16135, NCTC 13073, VPI N14B-15
straininfo link
- @ref: 94030
- straininfo: 46354
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 7981091 | Descriptions of Prevotella tannerae sp. nov. and Prevotella enoeca sp. nov. from the human gingival crevice and emendation of the description of Prevotella zoogleoformans. | Moore LV, Johnson JL, Moore WE | Int J Syst Bacteriol | 10.1099/00207713-44-4-599 | 1994 | Adult, Gingiva/*microbiology, Humans, Prevotella/*isolation & purification/metabolism | Pathogenicity |
| Phylogeny | 22753527 | Description of Alloprevotella rava gen. nov., sp. nov., isolated from the human oral cavity, and reclassification of Prevotella tannerae Moore et al. 1994 as Alloprevotella tannerae gen. nov., comb. nov. | Downes J, Dewhirst FE, Tanner ACR, Wade WG | Int J Syst Evol Microbiol | 10.1099/ijs.0.041376-0 | 2012 | Acetic Acid/metabolism, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Fermentation, Humans, Molecular Sequence Data, Mouth/*microbiology, *Phylogeny, Prevotella/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Succinic Acid/metabolism | Metabolism |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 36897 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104476 | Collection of Institut Pasteur (CIP 104476) | |||
| 52037 | Curators of the CCUG | https://www.ccug.se/strain?id=34292 | Culture Collection University of Gothenburg (CCUG) (CCUG 34292) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 94030 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID46354.1 |