Name: Alloprevotella tannerae CIP 104476
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 137052

Type strain:

Species: Alloprevotella tannerae

Culture col. no.: CIP 104476, ATCC 51259, JCM 13994, CCUG 34292, JCM 16135, NCTC 13073, VPI N14B-15

Strain history: CCUG 34292 <-- ATCC 51259 <-- L. V. Moore VPI N14B-15.

NCBI tax ID(s): 626522 (strain), 76122 (species)

SI-ID 46354

ATCC 51259, CCUG 34292, CIP 104476, NCTC 13073, JCM 13994

Special Collections

Section

Alloprevotella tannerae CIP 104476 is an anaerobe bacterium of the family Prevotellaceae.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Alloprevotella*
	Species	**Alloprevotella tannerae**
	Full Scientific Name (LPSN)	Alloprevotella tannerae (Moore et al. 1994) Downes et al. 2013

Synonym

Prevotella tannerae

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.821

[Ref.: #52037]

Incubation period

7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36897]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #36897]

Culture medium growth

[Ref.: #36897]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #36897]	growth	37 °C
[Ref.: #52037]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #52037]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %92.042

[Ref.: #69480]	Ability of spore formation	no Confidence in %93.978
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	90.91	20 of 22
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	starch degradation	80	8 of 10
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	pyrimidine metabolism	77.78	35 of 45
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	isoprenoid biosynthesis	69.23	18 of 26
[Ref.: #66794]	purine metabolism	69.15	65 of 94
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	methylglyoxal degradation	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	threonine metabolism	60	6 of 10
[Ref.: #66794]	alanine metabolism	58.62	17 of 29
[Ref.: #66794]	glutamate and glutamine metabolism	57.14	16 of 28
[Ref.: #66794]	aspartate and asparagine metabolism	55.56	5 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	55.56	5 of 9
[Ref.: #66794]	vitamin B6 metabolism	54.55	6 of 11
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	myo-inositol biosynthesis	50	5 of 10
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	isoleucine metabolism	50	4 of 8
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	lysine metabolism	47.62	20 of 42
[Ref.: #66794]	vitamin B1 metabolism	46.15	6 of 13
[Ref.: #66794]	phenylalanine metabolism	46.15	6 of 13
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	non-pathway related	42.11	16 of 38
[Ref.: #66794]	histidine metabolism	41.38	12 of 29
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	methionine metabolism	38.46	10 of 26
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	ketogluconate metabolism	37.5	3 of 8
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	pentose phosphate pathway	36.36	4 of 11
[Ref.: #66794]	oxidative phosphorylation	35.16	32 of 91
[Ref.: #66794]	tryptophan metabolism	34.21	13 of 38
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
[Ref.: #66794]	valine metabolism	33.33	3 of 9
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	L-lactaldehyde degradation	33.33	1 of 3
[Ref.: #66794]	lipid metabolism	32.26	10 of 31
[Ref.: #66794]	degradation of sugar alcohols	31.25	5 of 16
[Ref.: #66794]	leucine metabolism	30.77	4 of 13
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	Entner Doudoroff pathway	30	3 of 10
[Ref.: #66794]	reductive acetyl coenzyme A pathway	28.57	2 of 7
[Ref.: #66794]	ubiquinone biosynthesis	28.57	2 of 7
[Ref.: #66794]	d-xylose degradation	27.27	3 of 11
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	degradation of pentoses	25	7 of 28
[Ref.: #66794]	urea cycle	23.08	3 of 13
[Ref.: #66794]	ascorbate metabolism	22.73	5 of 22
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
[Ref.: #66794]	cysteine metabolism	22.22	4 of 18
[Ref.: #66794]	glutathione metabolism	21.43	3 of 14
[Ref.: #66794]	tyrosine metabolism	21.43	3 of 14
[Ref.: #66794]	arginine metabolism	20.83	5 of 24
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #52037]	Sample type/isolated from	Human gingival crevice of adult with gingivitis
[Ref.: #52037]	Country	USA
[Ref.: #52037]	Country ISO 3 Code	USA
[Ref.: #52037]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Human gingival crevice

[Ref.: #36897]	Country	USA
[Ref.: #36897]	Country ISO 3 Code	USA
[Ref.: #36897]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Oral cavity and airways	#Gingiva
#Host Body-Site	#Oral cavity and airways	#Tooth
#Host	#Human	-
#Infection	#Inflammation	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB971822 (>99% sequence identity) for Alloprevotella tannerae subclade from Microbeatlas

Aquatic Samples	71
Soil Samples	53
Animal Samples	5204
Plant Samples	30
Total Samples	5358

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alloprevotella tannerae gene for 16S ribosomal RNA, partial sequence, strain: JCM 16135	AB971822	1492	GenBank ENA	76122 tax ID
[Ref.: #67770]	Prevotella tannerae 16S rRNA gene, strain ATCC 51259	AJ005634	1453	GenBank ENA	626522 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alloprevotella tannerae ATCC 51259	GCA_000159995	scaffold	GenBank ENA	626522 tax ID
[Ref.: #66792]	Prevotella tannerae ATCC 51259	626522.3	wgs	PATRIC	626522 tax ID	*
[Ref.: #66792]	Alloprevotella tannerae ATCC 51259	645951840	draft	JGI IMG/M	626522 tax ID	*

[Ref.: #67770]

GC-content

45 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alloprevotella tannerae ATCC 51259 ATCC 51259 NCBI: GCA_000159995.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella tannerae ATCC 51259 PATRIC: 626522.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.821	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	92.042	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.978	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.673	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.012	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.375	no

Availability in culture collections External links

[Ref.: #36897]

Culture collection no.

CIP 104476, ATCC 51259, JCM 13994, CCUG 34292, JCM 16135, NCTC 13073, VPI N14B-15

[Ref.: #94030]

SI-ID 46354

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Alloprevotella rava gen. nov., sp. nov., isolated from the human oral cavity, and reclassification of Prevotella tannerae Moore et al. 1994 as Alloprevotella tannerae gen. nov., comb. nov.	Downes J, Dewhirst FE, Tanner ACR, Wade WG	Int J Syst Evol Microbiol	10.1099/ijs.0.041376-0	2012	*
Phylogeny	Descriptions of Prevotella tannerae sp. nov. and Prevotella enoeca sp. nov. from the human gingival crevice and emendation of the description of Prevotella zoogleoformans.	Moore LV, Johnson JL, Moore WE	Int J Syst Bacteriol	10.1099/00207713-44-4-599	1994	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36897 Collection of Institut Pasteur ; Curators of the CIP; CIP 104476
#52037 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 34292

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#94030

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46354.1 )

* These data were automatically processed and therefore are not curated

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Alloprevotella tannerae ATCC 51259 ATCC 51259

Prevotella tannerae ATCC 51259

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