Alloprevotella tannerae (CIP 104476, ATCC 51259, JCM 13994)

Name: Alloprevotella tannerae (CIP 104476, ATCC 51259, JCM 13994)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 137052

Type strain

Culture col. no. CIP 104476 ATCC 51259 JCM 13994 CCUG 34292 VPI N14B-15 2 more

NCBI tax ID(s) 626522 76122

Special Collections CCUG JCM CIP

History JCM <-- CCUG 34292 <-- ATCC 51259 <-- L. V. Moore VPI N14B-15.

Links

Alloprevotella tannerae CIP 104476 is an anaerobe bacterium of the family Prevotellaceae.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 46354

ATCC 51259,CCUG 34292,CIP 104476,NCTC 13073,JCM 13994

@ref 20215

Last LPSN update 2026-05-29 08:38:56

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Prevotellaceae

Genus Alloprevotella

Species Alloprevotella tannerae

Full scientific name Alloprevotella tannerae (Moore et al. 1994) Downes et al. 2013

Synonyms (1)

Prevotella tannerae

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125438	negative	97.821
125439		90.073

Colony morphology

52037

Incubation period7 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
36897	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)

Culture temp

@ref	Growth	Type	Temperature (°C)
36897	positive	growth	37
52037	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
52037	anaerobe
125438	anaerobe	92.042

Spore formation

@ref	Spore formation	Confidence
125438		93.978
125439		99.856

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	CMP-KDO biosynthesis	100	4 of 4
66794	glycogen metabolism	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	palmitate biosynthesis	90.91	20 of 22
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	NAD metabolism	83.33	15 of 18
66794	starch degradation	80	8 of 10
66794	lipoate biosynthesis	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	pyrimidine metabolism	77.78	35 of 45
66794	d-mannose degradation	77.78	7 of 9
66794	ppGpp biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	citric acid cycle	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	purine metabolism	69.15	65 of 94
66794	formaldehyde oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	methylglyoxal degradation	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	threonine metabolism	60	6 of 10
66794	alanine metabolism	58.62	17 of 29
66794	glutamate and glutamine metabolism	57.14	16 of 28
66794	aspartate and asparagine metabolism	55.56	5 of 9
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	vitamin B6 metabolism	54.55	6 of 11
66794	ethanol fermentation	50	1 of 2
66794	myo-inositol biosynthesis	50	5 of 10
66794	suberin monomers biosynthesis	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	isoleucine metabolism	50	4 of 8
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	adipate degradation	50	1 of 2
66794	lysine metabolism	47.62	20 of 42
66794	vitamin B1 metabolism	46.15	6 of 13
66794	phenylalanine metabolism	46.15	6 of 13
66794	propanol degradation	42.86	3 of 7
66794	non-pathway related	42.11	16 of 38
66794	histidine metabolism	41.38	12 of 29
66794	arachidonate biosynthesis	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	polyamine pathway	39.13	9 of 23
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	methionine metabolism	38.46	10 of 26
66794	sulfate reduction	38.46	5 of 13
66794	ketogluconate metabolism	37.5	3 of 8
66794	metabolism of disaccharids	36.36	4 of 11
66794	pentose phosphate pathway	36.36	4 of 11
66794	oxidative phosphorylation	35.16	32 of 91
66794	tryptophan metabolism	34.21	13 of 38
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	degradation of hexoses	33.33	6 of 18
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	valine metabolism	33.33	3 of 9
66794	nitrate assimilation	33.33	3 of 9
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	lipid metabolism	32.26	10 of 31
66794	degradation of sugar alcohols	31.25	5 of 16
66794	leucine metabolism	30.77	4 of 13
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	Entner Doudoroff pathway	30	3 of 10
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	ubiquinone biosynthesis	28.57	2 of 7
66794	d-xylose degradation	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	degradation of pentoses	25	7 of 28
66794	urea cycle	23.08	3 of 13
66794	ascorbate metabolism	22.73	5 of 22
66794	arachidonic acid metabolism	22.22	4 of 18
66794	cysteine metabolism	22.22	4 of 18
66794	glutathione metabolism	21.43	3 of 14
66794	tyrosine metabolism	21.43	3 of 14
66794	arginine metabolism	20.83	5 of 24

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	#Gingiva
#Host Body-Site	#Oral cavity and airways	#Tooth
#Host	#Human	-
#Infection	#Inflammation	-

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
36897			USA	USA	North America
52037	Human gingival crevice of adult with gingivitis	Homo sapiens	USA	USA	North America
67770	Human gingival crevice	Homo sapiens

Taxonmaps

69479

Global distribution of 16S sequence AB971822 (>99% sequence identity) for Alloprevotella tannerae subclade from Microbeatlas

Aquatic Samples	71
Soil Samples	53
Animal Samples	5204
Plant Samples	30
Total Samples	5358

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM15999v1 assembly for Alloprevotella tannerae ATCC 51259	scaffold	GCA_000159995	626522.11	645951840	626522	71.51
66792	Prevotella tannerae ATCC 51259	contig		626522.3		626522	22.3

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Alloprevotella tannerae gene for 16S ribosomal RNA, partial sequence, strain: JCM 16135	AB971822	1492		76122
67770	Prevotella tannerae 16S rRNA gene, strain ATCC 51259	AJ005634	1453		626522

GC content

67770

GC-content (mol%)45

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM15999v1 assembly for Alloprevotella tannerae ATCC 51259
NCBI: GCA_000159995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	88.12	no
125439	motility	BacteriaNetⓘ	no	90.07	no
125439	gram_stain	BacteriaNetⓘ	negative	88.87	no
125439	spore_formation	BacteriaNetⓘ	no	99.86	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Prevotella tannerae ATCC 51259
PATRIC: 626522.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.82	no
125438	anaerobic	anaerobicⓘ	yes	92.04	yes
125438	spore-forming	spore-formingⓘ	no	93.98	no
125438	aerobic	aerobicⓘ	no	97.67	no
125438	thermophilic	thermophileⓘ	no	94.01	no
125438	flagellated	motile2+ⓘ	no	89.38	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Metatranscriptomic analysis shows functional alterations in subgingival biofilm in young smokers with periodontitis: a pilot study.	Casarin RCV, Silva RVCD, Paz HES, Stolf CS, Carvalho LM, Noronha MF, Sallum AW, Monteiro MF.	J Appl Oral Sci	10.1590/1678-7757-2024-0031	2024
	Deep sequencing of biofilm microbiomes on dental composite materials.	Conrads G, Wendt LK, Hetrodt F, Deng ZL, Pieper D, Abdelbary MMH, Barg A, Wagner-Dobler I, Apel C.	J Oral Microbiol	10.1080/20002297.2019.1617013	2019
	Impact of HIV on the Oral Microbiome of Children Living in Sub-Saharan Africa, Determined by Using an rpoC Gene Fragment Metataxonomic Approach.	Mann AE, O'Connell LM, Osagie E, Akhigbe P, Obuekwe O, Omoigberale A, Kelly C, DOMHaIN Study Team, Coker MO, Richards VP.	Microbiol Spectr	10.1128/spectrum.00871-23	2023
Enzymology	Microbial diversity similarities in periodontal pockets and atheromatous plaques of cardiovascular disease patients.	Serra e Silva Filho W, Casarin RC, Nicolela EL, Passos HM, Sallum AW, Goncalves RB.	PLoS One	10.1371/journal.pone.0109761	2014
Transcriptome	Gene expression of bacterial collagenolytic proteases in root caries.	Dame-Teixeira N, Parolo CCF, Maltz M, Rup AG, Devine DA, Do T.	J Oral Microbiol	10.1080/20002297.2018.1424475	2018
Genetics	A Comparative Analysis of Biosynthetic Gene Clusters in Lean and Obese Humans.	Wang S, Li N, Li N, Zou H, Wu M.	Biomed Res Int	10.1155/2019/6361320	2019
Enzymology	pH gradient and distribution of streptococci, lactobacilli, prevotellae, and fusobacteria in carious dentine.	Kianoush N, Nguyen KA, Browne GV, Simonian M, Hunter N.	Clin Oral Investig	10.1007/s00784-013-1009-0	2014
	Oropharyngeal microbiome alterations in sarcopenia: a nested case-control study in older adults.	Li R, Jiang W, Tang H, Luo S, Chen X, Chen Q, Yang M.	J Gerontol A Biol Sci Med Sci	10.1093/gerona/glaf201	2025
	Bacterial translocation signatures and subgingival microbiome in individuals with periodontitis.	Britos M, Hernandez M, Fernandez A, Pellegrini E, Chaparro L, Chaparro A, Suarez LJ, Hoare A, Hernandez-Rios P.	Clin Oral Investig	10.1007/s00784-025-06363-9	2025
	Exploring AI-Driven Machine Learning Approaches for Optimal Classification of Peri-Implantitis Based on Oral Microbiome Data: A Feasibility Study.	Pais RJ, Botelho J, Machado V, Alcoforado G, Mendes JJ, Alves R, Bessa LJ.	Diagnostics (Basel)	10.3390/diagnostics15040425	2025
Phylogeny	Altered oral health and microbiota in drug-free patients with schizophrenia.	Huang H, Yang N, Chen MM, Chen X, Chen W, Li X, Chen Y, Deng Z, Zhou W, Xu SX, Xie XH.	BMC Psychiatry	10.1186/s12888-025-06633-6	2025
	Oral and gut microbial profiling in periodontitis and Parkinson's disease.	Yay E, Yilmaz M, Toygar H, Balci N, Alvarez Rivas C, Bolluk Kilic B, Zirh A, Paster BJ, Kantarci A.	J Oral Microbiol	10.1080/20002297.2024.2331264	2024
	[Correlation analysis of age and microbial characteristics in saliva and feces of high-risk population of upper gastrointestinal cancer].	Li MJ, Shao DT, Zhou JC, Gu JH, Fan ZY, Qin JJ, Li XQ, Hao CQ, Wei WW.	Zhonghua Yu Fang Yi Xue Za Zhi	10.3760/cma.j.cn112150-20220715-00720	2022
	Taxonomic Diversity and Clinical Correlations in Periapical Lesions by Next-Generation Sequencing Analysis.	Bronzato JD, Gomes BPFA, Chen T.	Genes (Basel)	10.3390/genes16070775	2025
	Unveiling the Relationship Between Oral Microbiota and Alzheimer's Disease: A Genetic Instrumental Variable Analysis via Mendelian Randomization.	Li Z, Kang Y, Li S, Guo S, Zheng H.	Brain Behav	10.1002/brb3.70753	2025
Pathogenicity	A novel conjugative transposon carrying an autonomously amplified plasmid.	Vineis JH, Reznikoff WS, Antonopoulos DA, Koval J, Chang E, Fallon BR, Paul BG, Morrison HG, Sogin ML.	mBio	10.1128/mbio.02787-23	2024
	Influence of cigarette smoking on oral microbiota in patients with recurrent aphthous stomatitis.	Wang X, Luo N, Mi Q, Kong W, Zhang W, Li X, Gao Q.	J Investig Med	10.1136/jim-2021-002119	2022
	Detailed Characterization of the Lung-Gut Microbiome Axis Reveals the Link between PD-L1 and the Microbiome in Non-Small-Cell Lung Cancer Patients.	Ankudavicius V, Nikitina D, Lukosevicius R, Tilinde D, Salteniene V, Poskiene L, Miliauskas S, Skieceviciene J, Zemaitis M, Kupcinskas J.	Int J Mol Sci	10.3390/ijms25042323	2024
	Repurposing of the Macrolide Antibiotic Clarithromycin for the Prevention of Lung Cancer.	Deng S, Hussain T, Bartelli TF, Sebastian MM, Zarghooni M, Velasco WV, Somerville B, Phan L, Savage MI, Song Y, Clifford JL, Kadara H, McAllister F, Brown PH, Moghaddam SJ, Aldaz CM.	Mol Cancer Ther	10.1158/1535-7163.mct-25-0392	2025
	Microbiota in adult perianal abscess revealed by metagenomic next-generation sequencing.	Hong J-C, Chen J-S, Jiang Z-J, Chen Z-C, Ruan N, Yao X-P.	Microbiol Spectr	10.1128/spectrum.03474-23	2024
	Analysis of microbiotas between traumatic and ulcerative wound: insights into challenges of current wounds managements.	Chen C, Wang J, Li Y, Fan Z, Dai Y.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1622552	2025
	Impact of toothpaste use on the subgingival microbiome: a pilot randomized clinical trial.	Iniesta M, Vasconcelos V, Laciar F, Matesanz P, Sanz M, Herrera D.	BMC Oral Health	10.1186/s12903-025-06159-z	2025
Phylogeny	Next-Generation Sequencing to Assess Potentially Active Bacteria in Endodontic Infections.	Nardello LCL, Amado PPP, Franco DC, Cazares RXR, Nogales CG, Mayer MPA, Karygianni L, Thurnheer T, Pinheiro ET.	J Endod	10.1016/j.joen.2020.05.004	2020
Enzymology	Maintenance of the aseptic working field during endodontic treatment.	Rorslett Hardersen L, Enersen M, Kristoffersen AK, Orstavik D, Sunde PT.	Acta Odontol Scand	10.1080/00016357.2019.1606935	2019
	The impact of Limosilactobacillus reuteri in combination with non-surgical periodontal therapy on periodontal clinical parameters and salivary and subgingival microbiota composition in individuals with stage III-IV periodontitis: a randomized controlled trial.	Huo P, Deng L, Lu J, Kan P, Jing R, Luo LJ.	BMC Oral Health	10.1186/s12903-025-06084-1	2025
Genetics	Linking periodontitis with 20 cancers, emphasis on oropharyngeal cancer: a Mendelian randomization analysis.	Xiong J, Liu H, Li C, Li Y, Feng J.	Sci Rep	10.1038/s41598-024-63447-4	2024
	919 Syrup Alleviates Postpartum Depression by Modulating the Structure and Metabolism of Gut Microbes and Affecting the Function of the Hippocampal GABA/Glutamate System.	Tian XY, Xing JW, Zheng QQ, Gao PF.	Front Cell Infect Microbiol	10.3389/fcimb.2021.694443	2021
Enzymology	Evaluation of the Associations Between Cervical Microbiota and HPV Infection, Clearance, and Persistence in Cytologically Normal Women.	Ritu W, Enqi W, Zheng S, Wang J, Ling Y, Wang Y.	Cancer Prev Res (Phila)	10.1158/1940-6207.capr-18-0233	2019
	Old age and other factors associated with salivary microbiome variation.	Schwartz JL, Pena N, Kawar N, Zhang A, Callahan N, Robles SJ, Griebel A, Adami GR.	BMC Oral Health	10.1186/s12903-021-01828-1	2021
	Differences Between Vietnamese Living in Germany and German Periodontitis Patients in Periodontal Conditions and Subgingival Microbiota.	Reichert S, Switala H, Schulz S.	Int Dent J	10.1016/j.identj.2024.09.021	2025
	Altered microbiota of the lower respiratory tract and its association with COVID-19 severity analysed by metagenomics and metatranscriptomics.	Wang D, Duan Y, He L, Jiang J, Xian J, Yuan K, Zhang R, Zhang H, Wang J, Li N, Huang M, Hu C, Lu S, Luo Z, Deng T, Zhang Z, Chen B, Li W.	Commun Biol	10.1038/s42003-025-08234-1	2025
Pathogenicity	Investigating Blood Biomarkers That Can Facilitate the Diagnosis of Meningitis-A Systematic Literature Review.	Baran JM, Porebska A, Lesisz M, Polak K, Grodzka O, Domitrz I.	Int J Mol Sci	10.3390/ijms26041427	2025
Pathogenicity	Variations in the oral microbiome are associated with depression in young adults.	Wingfield B, Lapsley C, McDowell A, Miliotis G, McLafferty M, O'Neill SM, Coleman S, McGinnity TM, Bjourson AJ, Murray EK.	Sci Rep	10.1038/s41598-021-94498-6	2021
Genetics	One-step diagnosis of infection and lung cancer using metagenomic sequencing.	Li S, Zhan Y, Wang Y, Li W, Wang X, Wang H, Sun W, Cao X, Li Z, Ye F.	Respir Res	10.1186/s12931-025-03127-7	2025
	Differences in the landscape of colonized microorganisms in different oral potentially malignant disorders and squamous cell carcinoma: a multi-group comparative study.	Zhou X, Cai X, Tang Q, Zhang J, Bai J, Jing F, Gao L, Zhang H, Li T.	BMC Microbiol	10.1186/s12866-024-03458-3	2024
	Microbial signatures of neonatal bacterial meningitis from multiple body sites.	Hou Y, Zhang M, Jiang Q, Yang Y, Liu J, Yuan K, Sun Z, Liu X.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1169101	2023
	Detection of aerobe-anaerobe mixed infection by metagenomic next-generation sequencing in an adult suffering from descending necrotizing mediastinitis.	Duan J, Zhang C, Che X, Fu J, Pang F, Zhao Q, You Z.	BMC Infect Dis	10.1186/s12879-021-06624-4	2021
Phylogeny	The salivary microbiome as a diagnostic biomarker of periodontitis: a 16S multi-batch study before and after the removal of batch effects.	Regueira-Iglesias A, Suarez-Rodriguez B, Blanco-Pintos T, Relvas M, Alonso-Sampedro M, Balsa-Castro C, Tomas I.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1405699	2024
	Multi-omics analysis of immune-related microbiome and prognostic model in head and neck squamous cell carcinoma.	Liu Y, Lin H, Zhong W, Zeng Y, Zhou G, Chen Z, Huang S, Zhang L, Liu X.	Clin Oral Investig	10.1007/s00784-024-05645-y	2024
	Aging Aggravates Periodontal Inflammatory Responses and Alveolar Bone Resorption by Porphyromonas gingivalis Infection.	Song Y, Chung J.	Curr Issues Mol Biol	10.3390/cimb45080416	2023
	High-performing cross-dataset machine learning reveals robust microbiota alteration in secondary apical periodontitis.	Li H, Li J, Hu J, Chen J, Zhou W.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1393108	2024
Phylogeny	From Mouth to Brain: Distinct Supragingival Plaque Microbiota Composition in Cerebral Palsy Children With Caries.	Liu M, Shi Y, Wu K, Xie W, Ser HL, Jiang Q, Wu L.	Front Cell Infect Microbiol	10.3389/fcimb.2022.814473	2022
Phylogeny	Obesity as Inducer of Cognitive Function Decline via Dysbiosis of Gut Microbiota in Rats.	Mabrok HB, Ramadan AA, Hamed IM, Mohamed DA.	Brain Sci	10.3390/brainsci14080807	2024
	Hyposalivation but not Sjögren's syndrome associated with microbial dysbiosis in women.	Sauco C, Rus MJ, Nieto MR, Barros C, Cantiga-Silva C, Lendines-Cordero D, Calderer-Ortiz M, Zurita-Garcia M, Arias-Herrera S, Monsalve-Guil L, Segura-Egea JJ, Simon-Soro A.	Front Microbiol	10.3389/fmicb.2023.1240891	2023
	Oral microbiome associated with differential ratios of Porphyromonas gingivalis and Streptococcus cristatus.	Wang Q, Wang B-Y, Pratap S, Xie H.	Microbiol Spectr	10.1128/spectrum.03482-23	2024
	Nitrate and a nitrate-reducing Rothia aeria strain as potential prebiotic or synbiotic treatments for periodontitis.	Mazurel D, Carda-Dieguez M, Langenburg T, Ziemyte M, Johnston W, Martinez CP, Albalat F, Llena C, Al-Hebshi N, Culshaw S, Mira A, Rosier BT.	NPJ Biofilms Microbiomes	10.1038/s41522-023-00406-3	2023
	Optimization of conditions for in vitro modeling of subgingival normobiosis and dysbiosis.	Baraniya D, Do T, Chen T, Albandar JM, Chialastri SM, Devine DA, Marsh PD, Al-Hebshi NN.	Front Microbiol	10.3389/fmicb.2022.1031029	2022
	Saliva microbiome, dietary, and genetic markers are associated with suicidal ideation in university students.	Ahrens AP, Sanchez-Padilla DE, Drew JC, Oli MW, Roesch LFW, Triplett EW.	Sci Rep	10.1038/s41598-022-18020-2	2022
	Features of the oral microbiome in Japanese elderly people with 20 or more teeth and a non-severe periodontal condition during periodontal maintenance treatment: A cross-sectional study.	Toyama N, Ekuni D, Yokoi A, Fukuhara D, Islam MM, Sawada N, Nakashima Y, Nakahara M, Sumita I, Morita M.	Front Cell Infect Microbiol	10.3389/fcimb.2022.957890	2022
	Hospital antimicrobial stewardship: profiling the oral microbiome after exposure to COVID-19 and antibiotics.	Buendia P, Fernandez K, Raley C, Rahnavard A, Crandall KA, Castro JG.	Front Microbiol	10.3389/fmicb.2024.1346762	2024
Phylogeny	Oral Microbiome Traits of Type 1 Diabetes and Phenylketonuria Patients in Latvia.	Abola I, Gudra D, Ustinova M, Fridmanis D, Emulina DE, Skadins I, Brinkmane A, Lauga-Tunina U, Gailite L, Auzenbaha M.	Microorganisms	10.3390/microorganisms11061471	2023
	Microbiomes and Resistomes in Biopsy Tissue and Intestinal Lavage Fluid of Colorectal Cancer.	Yuan Y, Chen Y, Yao F, Zeng M, Xie Q, Shafiq M, Noman SM, Jiao X.	Front Cell Dev Biol	10.3389/fcell.2021.736994	2021
Phylogeny	Oral Microbiota Identifies Patients in Early Onset Rheumatoid Arthritis.	Esberg A, Johansson L, Johansson I, Dahlqvist SR.	Microorganisms	10.3390/microorganisms9081657	2021
Genetics	Metagenomic Signatures of Gut Infections Caused by Different Escherichia coli Pathotypes.	Pena-Gonzalez A, Soto-Giron MJ, Smith S, Sistrunk J, Montero L, Paez M, Ortega E, Hatt JK, Cevallos W, Trueba G, Levy K, Konstantinidis KT.	Appl Environ Microbiol	10.1128/aem.01820-19	2019
	The role of the oral microbiome in smoking-related cardiovascular risk: a review of the literature exploring mechanisms and pathways.	Maki KA, Ganesan SM, Meeks B, Farmer N, Kazmi N, Barb JJ, Joseph PV, Wallen GR.	J Transl Med	10.1186/s12967-022-03785-x	2022
	Microbial characteristics across different tongue coating types in a healthy population.	Chen H, Li Q, Li M, Liu S, Yao C, Wang Z, Zhao Z, Liu P, Yang F, Li X, Wang J, Zeng Y, Tong X.	J Oral Microbiol	10.1080/20002297.2021.1946316	2021
	Clinical study showing a lower abundance of Neisseria in the oral microbiome aligns with low birth weight pregnancy outcomes.	Ye C, You M, Huang P, Xia Z, Radaic A, Tang J, Wu W, Wu Y, Kapila Y.	Clin Oral Investig	10.1007/s00784-021-04214-x	2022
	Fecal microbiota from MRL/lpr mice exacerbates pristane-induced lupus.	Yi X, Huang C, Huang C, Zhao M, Lu Q.	Arthritis Res Ther	10.1186/s13075-023-03022-w	2023
	New Insights into the Microbial Profiles of Infected Root Canals in Traumatized Teeth.	Manoharan L, Brundin M, Rakhimova O, Chavez de Paz L, Romani Vestman N.	J Clin Med	10.3390/jcm9123877	2020
Metabolism	Gut microbial profiles and the role in lipid metabolism in Shaziling pigs.	Ma J, Duan Y, Li R, Liang X, Li T, Huang X, Yin Y, Yin J.	Anim Nutr	10.1016/j.aninu.2021.10.012	2022
Genetics	Metagenomic Analysis of Saliva Reveals Disease-Associated Microbiotas in Patients With Periodontitis and Crohn's Disease-Associated Periodontitis.	Sun B, Liu B, Gao X, Xing K, Xie L, Guo T.	Front Cell Infect Microbiol	10.3389/fcimb.2021.719411	2021
	The upper respiratory tract microbiota of healthy adults is affected by Streptococcus pneumoniae carriage, smoking habits, and contact with children.	Paulo AC, Lanca J, Almeida ST, Hilty M, Sa-Leao R.	Microbiome	10.1186/s40168-023-01640-9	2023
	The multispecies microbial cluster of Fusobacterium, Parvimonas, Bacteroides and Faecalibacterium as a precision biomarker for colorectal cancer diagnosis.	Conde-Perez K, Aja-Macaya P, Buetas E, Trigo-Tasende N, Nasser-Ali M, Rumbo-Feal S, Nion P, Arribas EM, Estevez LS, Otero-Alen B, Noguera JF, Concha A, Pardinas-Lopez S, Carda-Dieguez M, Gomez-Randulfe I, Martinez-Lago N, Ladra S, Aparicio LMA, Bou G, Mira A, Vallejo JA, Poza M.	Mol Oncol	10.1002/1878-0261.13604	2024
Phylogeny	Microcosm biofilms cultured from different oral niches in periodontitis patients.	Cieplik F, Zaura E, Brandt BW, Buijs MJ, Buchalla W, Crielaard W, Laine ML, Deng DM, Exterkate RAM.	J Oral Microbiol	10.1080/20022727.2018.1551596	2019
	Associations of the skin, oral and gut microbiome with aging, frailty and infection risk reservoirs in older adults.	Larson PJ, Zhou W, Santiago A, Driscoll S, Fleming E, Voigt AY, Chun OK, Grady JJ, Kuchel GA, Robison JT, Oh J.	Nat Aging	10.1038/s43587-022-00287-9	2022
	Haemophilus pittmaniae and Leptotrichia spp. Constitute a Multi-Marker Signature in a Cohort of Human Papillomavirus-Positive Head and Neck Cancer Patients.	Mougeot JC, Beckman MF, Langdon HC, Lalla RV, Brennan MT, Bahrani Mougeot FK.	Front Microbiol	10.3389/fmicb.2021.794546	2021
Phylogeny	Ethnic variation of oral microbiota in children.	Premaraj TS, Vella R, Chung J, Lin Q, Hunter P, Underwood K, Premaraj S, Zhou Y.	Sci Rep	10.1038/s41598-020-71422-y	2020
	The bacterial microbiome and metabolome in caries progression and arrest.	da Costa Rosa T, de Almeida Neves A, Azcarate-Peril MA, Divaris K, Wu D, Cho H, Moss K, Paster BJ, Chen T, B Freitas-Fernandes L, Fidalgo TKS, Tadeu Lopes R, Valente AP, R Arnold R, de Aguiar Ribeiro A.	J Oral Microbiol	10.1080/20002297.2021.1886748	2021
Genetics	Investigation of Spaceflight Induced Changes to Astronaut Microbiomes.	Morrison MD, Thissen JB, Karouia F, Mehta S, Urbaniak C, Venkateswaran K, Smith DJ, Jaing C.	Front Microbiol	10.3389/fmicb.2021.659179	2021
Phylogeny	Comparison of bacterial culture and 16S rRNA community profiling by clonal analysis and pyrosequencing for the characterization of the dentine caries-associated microbiome.	Schulze-Schweifing K, Banerjee A, Wade WG.	Front Cell Infect Microbiol	10.3389/fcimb.2014.00164	2014
	Enhanced metagenomic deep learning for disease prediction and consistent signature recognition by restructured microbiome 2D representations.	Shen WX, Liang SR, Jiang YY, Chen YZ.	Patterns (N Y)	10.1016/j.patter.2022.100658	2023
	The Oral-Gut Axis: Periodontal Diseases and Gastrointestinal Disorders.	Lam GA, Albarrak H, McColl CJ, Pizarro A, Sanaka H, Gomez-Nguyen A, Cominelli F, Paes Batista da Silva A.	Inflamm Bowel Dis	10.1093/ibd/izac241	2023
	Electronic Cigarette Aerosol Modulates the Oral Microbiome and Increases Risk of Infection.	Pushalkar S, Paul B, Li Q, Yang J, Vasconcelos R, Makwana S, Gonzalez JM, Shah S, Xie C, Janal MN, Queiroz E, Bederoff M, Leinwand J, Solarewicz J, Xu F, Aboseria E, Guo Y, Aguallo D, Gomez C, Kamer A, Shelley D, Aphinyanaphongs Y, Barber C, Gordon T, Corby P, Li X, Saxena D.	iScience	10.1016/j.isci.2020.100884	2020
Metabolism	Xenometabolite signatures in the UC Davis type 2 diabetes mellitus rat model revealed using a metabolomics platform enriched with microbe-derived metabolites.	Mercer KE, Yeruva L, Pack L, Graham JL, Stanhope KL, Chintapalli SV, Wankhade UD, Shankar K, Havel PJ, Adams SH, Piccolo BD.	Am J Physiol Gastrointest Liver Physiol	10.1152/ajpgi.00105.2020	2020
Pathogenicity	Prevotella species as oral residents and infectious agents with potential impact on systemic conditions.	Kononen E, Fteita D, Gursoy UK, Gursoy M.	J Oral Microbiol	10.1080/20002297.2022.2079814	2022
	Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients.	Zeybel M, Altay O, Arif M, Li X, Yang H, Fredolini C, Akyildiz M, Saglam B, Gonenli MG, Ural D, Kim W, Schwenk JM, Zhang C, Shoaie S, Nielsen J, Uhlen M, Boren J, Mardinoglu A.	Mol Syst Biol	10.15252/msb.202110459	2021
Biotechnology	Bioremediation of Total Petroleum Hydrocarbons (TPH) by Bioaugmentation and Biostimulation in Water with Floating Oil Spill Containment Booms as Bioreactor Basin.	Sayed K, Baloo L, Sharma NK.	Int J Environ Res Public Health	10.3390/ijerph18052226	2021
	Relationship between dental and periodontal health status and the salivary microbiome: bacterial diversity, co-occurrence networks and predictive models.	Relvas M, Regueira-Iglesias A, Balsa-Castro C, Salazar F, Pacheco JJ, Cabral C, Henriques C, Tomas I.	Sci Rep	10.1038/s41598-020-79875-x	2021
Genetics	Defining the gut microbiota in individuals with periodontal diseases: an exploratory study.	Lourenso TGB, Spencer SJ, Alm EJ, Colombo APV.	J Oral Microbiol	10.1080/20002297.2018.1487741	2018
Metabolism	Evaluation of the gut microbiome in association with biological signatures of inflammation in murine polytrauma and shock.	Appiah SA, Foxx CL, Langgartner D, Palmer A, Zambrano CA, Braumuller S, Schaefer EJ, Wachter U, Elam BL, Radermacher P, Stamper CE, Heinze JD, Salazar SN, Luthens AK, Arnold AL, Reber SO, Huber-Lang M, Lowry CA, Halbgebauer R.	Sci Rep	10.1038/s41598-021-85897-w	2021
	Microbial signature profiles of periodontally healthy and diseased patients.	Lourenco TG, Heller D, Silva-Boghossian CM, Cotton SL, Paster BJ, Colombo AP.	J Clin Periodontol	10.1111/jcpe.12302	2014
	Comparison of the salivary and dentinal microbiome of children with severe-early childhood caries to the salivary microbiome of caries-free children.	Hurley E, Barrett MPJ, Kinirons M, Whelton H, Ryan CA, Stanton C, Harris HMB, O'Toole PW.	BMC Oral Health	10.1186/s12903-018-0693-1	2019
	The Microbiome in Populations with a Low and High Prevalence of Caries.	Johansson I, Witkowska E, Kaveh B, Lif Holgerson P, Tanner AC.	J Dent Res	10.1177/0022034515609554	2016
	Robust species taxonomy assignment algorithm for 16S rRNA NGS reads: application to oral carcinoma samples.	Al-Hebshi NN, Nasher AT, Idris AM, Chen T.	J Oral Microbiol	10.3402/jom.v7.28934	2015
Genetics	Integrating next-generation sequencing and traditional tongue diagnosis to determine tongue coating microbiome.	Jiang B, Liang X, Chen Y, Ma T, Liu L, Li J, Jiang R, Chen T, Zhang X, Li S.	Sci Rep	10.1038/srep00936	2012
	Bacterial profile of dentine caries and the impact of pH on bacterial population diversity.	Kianoush N, Adler CJ, Nguyen KA, Browne GV, Simonian M, Hunter N.	PLoS One	10.1371/journal.pone.0092940	2014
	Single cell genomics of uncultured, health-associated Tannerella BU063 (Oral Taxon 286) and comparison to the closely related pathogen Tannerella forsythia.	Beall CJ, Campbell AG, Dayeh DM, Griffen AL, Podar M, Leys EJ.	PLoS One	10.1371/journal.pone.0089398	2014
Phylogeny	Genome-Based Taxonomic Classification of Bacteroidetes.	Hahnke RL, Meier-Kolthoff JP, Garcia-Lopez M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Goker M.	Front Microbiol	10.3389/fmicb.2016.02003	2016
Metabolism	Gut bacteria identified in colorectal cancer patients promote tumourigenesis via butyrate secretion.	Okumura S, Konishi Y, Narukawa M, Sugiura Y, Yoshimoto S, Arai Y, Sato S, Yoshida Y, Tsuji S, Uemura K, Wakita M, Matsudaira T, Matsumoto T, Kawamoto S, Takahashi A, Itatani Y, Miki H, Takamatsu M, Obama K, Takeuchi K, Suematsu M, Ohtani N, Fukunaga Y, Ueno M, Sakai Y, Nagayama S, Hara E.	Nat Commun	10.1038/s41467-021-25965-x	2021
Metabolism	Pseudoprevotella muciniphila gen. nov., sp. nov., a mucin-degrading bacterium attached to the bovine rumen epithelium.	Na SW, Chun BH, Beak SH, Khan SA, Haque MN, Lee JS, Jeon CO, Lee SS, Baik M.	PLoS One	10.1371/journal.pone.0251791	2021
Phylogeny	Description of Alloprevotella rava gen. nov., sp. nov., isolated from the human oral cavity, and reclassification of Prevotella tannerae Moore et al. 1994 as Alloprevotella tannerae gen. nov., comb. nov.	Downes J, Dewhirst FE, Tanner ACR, Wade WG	Int J Syst Evol Microbiol	10.1099/ijs.0.041376-0	2012
Phylogeny	Descriptions of Prevotella tannerae sp. nov. and Prevotella enoeca sp. nov. from the human gingival crevice and emendation of the description of Prevotella zoogleoformans.	Moore LV, Johnson JL, Moore WE	Int J Syst Bacteriol	10.1099/00207713-44-4-599	1994

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36897	Collection of Institut Pasteur ; Curators of the CIP; CIP 104476
#52037	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 34292
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alloprevotella tannerae (CIP 104476, ATCC 51259, JCM 13994)

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