Strain identifier

BacDive ID: 136874

Type strain: Yes

Species: Paraglaciecola psychrophila

Strain Designation: 170

Strain history: CIP <- 2007, JCM <- 2006, D. Zhang, P. Zhou, China Univ., Beijing, China: strain 170

NCBI tax ID(s): 326544 (species)

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General

@ref: 36582

BacDive-ID: 136874

keywords: genome sequence, 16S sequence, Bacteria, psychrophilic, Gram-negative, motile, rod-shaped

description: Paraglaciecola psychrophila 170 is a psychrophilic, Gram-negative, motile bacterium of the family Alteromonadaceae.

NCBI tax id

  • NCBI tax id: 326544
  • Matching level: species

strain history

@refhistory
67770D.-C. Zhang and P.-J. Zhou 170.
36582CIP <- 2007, JCM <- 2006, D. Zhang, P. Zhou, China Univ., Beijing, China: strain 170

doi: 10.13145/bacdive136874.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Paraglaciecola
  • species: Paraglaciecola psychrophila
  • full scientific name: Paraglaciecola psychrophila (Zhang et al. 2006) Shivaji and Reddy 2014

  • synonyms

    • @ref: 20215
    • synonym: Glaciecola psychrophila

@ref: 36582

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Paraglaciecola

species: Paraglaciecola psychrophila

strain designation: 170

type strain: yes

Morphology

cell morphology

  • @ref: 36582
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36582Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
36582CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
36582positivegrowth15psychrophilic
67770positivegrowth13psychrophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3658217632nitrate-reduction
3658216301nitrite-reduction

metabolite production

  • @ref: 36582
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
36582oxidase+
36582catalase+1.11.1.6
36582urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36582-++--++--+----------

Isolation, sampling and environmental information

isolation

@refcountrycontinentsample type
36582ArcticArctic
67770Sea-ice samples collected from high latitude Arctic locations
36582ArcticArcticMarine agar

taxonmaps

  • @ref: 69479
  • File name: preview.99_544.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_345;97_385;98_442;99_544&stattab=map
  • Last taxonomy: Paraglaciecola psychrophila
  • 16S sequence: DQ007436
  • Sequence Identity:
  • Total samples: 9589
  • soil counts: 181
  • aquatic counts: 8918
  • animal counts: 402
  • plant counts: 88

Safety information

risk assessment

  • @ref: 36582
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Glaciecola psychrophila strain 170 16S ribosomal RNA gene, partial sequence
  • accession: DQ007436
  • length: 1509
  • database: ena
  • NCBI tax ID: 326544

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
67770Paraglaciecola psychrophila 170GCA_000315075contigncbi1129794
67770Paraglaciecola psychrophila 170GCA_000347635completencbi1129794

GC content

@refGC-contentmethod
6777040.3genome sequence analysis
6777042.9thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes88.653no
flagellatedyes88.838no
gram-positiveno98.919no
anaerobicno97.699no
aerobicyes80.356no
halophileyes66.258no
spore-formingno96.53no
thermophileno99.559no
glucose-utilyes90.952no
glucose-fermentno76.209no

External links

@ref: 36582

culture collection no.: CIP 109542, JCM 13954, CGMCC 1.6130

straininfo link

  • @ref: 93897
  • straininfo: 297223

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17158989Glaciecola psychrophila sp. nov., a novel psychrophilic bacterium isolated from the Arctic.Zhang DC, Yu Y, Chen B, Wang HX, Liu HC, Dong XZ, Zhou PJInt J Syst Evol Microbiol10.1099/ijs.0.64575-02006Alteromonadaceae/*classification/genetics/isolation & purification, Arctic Regions, Bacterial Typing Techniques, *Cold Temperature, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Ice Cover/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny30608230Glaciecola amylolytica sp. nov., an amylase-producing bacterium isolated from seawater.Xiao YK, Yan ZF, Kim Y, Lee HM, Trinh H, Yang JE, Won KH, Yi TH, Kook MInt J Syst Evol Microbiol10.1099/ijsem.0.0032222019Alteromonadaceae/*classification/isolation & purification, Amylases, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome
Phylogeny32687464Paraglaciecola marina sp. nov., isolated from marine alga (Sargassum natans (L.) Gaillon).Wang Y, Zhang Y, Liu T, Zhu X, Ma J, Su X, Kang J, Guo CInt J Syst Evol Microbiol10.1099/ijsem.0.0041322020Alteromonadaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sargassum/*microbiology, Seawater/microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36582Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109542Collection of Institut Pasteur (CIP 109542)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
93897Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID297223.1