Paraglaciecola psychrophila (CIP 109542, JCM 13954, CGMCC 1.6130)

Name: Paraglaciecola psychrophila (CIP 109542, JCM 13954, CGMCC 1.6130)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 136874

Type strain

Strain Designation 170

Culture col. no. CIP 109542 JCM 13954 CGMCC 1.6130 170

NCBI tax ID(s) 326544

Special Collections JCM CIP

History JCM <-- D.-C. Zhang and P.-J. Zhou 170. CIP <- 2007, JCM <- 2006, D. Zhang, P. Zhou, China Univ., Beijing, China: strain 170

Links

Paraglaciecola psychrophila 170 is a Gram-negative, motile, rod-shaped bacterium of the family Alteromonadaceae.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 297223

CGMCC 1.6130,JCM 13954,CIP 109542

@ref 20215

Last LPSN update 2026-05-29 08:38:54

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Paraglaciecola

Species Paraglaciecola psychrophila

Full scientific name Paraglaciecola psychrophila (Zhang et al. 2006) Shivaji and Reddy 2014

Synonyms (1)

Glaciecola psychrophila

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
36582	negative	rod-shaped
125438	negative		99
125439	negative		96.789

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
36582	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
36582	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
36582	positive	growth	15
67770	positive	growth	13

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.651

Spore formation

@ref	Spore formation	Confidence
125439		98.82

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
36582	17632 ChEBI	nitrate	-	reduction
36582	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
36582	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
36582	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
36582	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
36582	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
36582	-	+	+	-	-	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Continent
36582		Arctic	Arctic
67770	Sea-ice samples collected from high latitude Arctic locations
36582	Marine agar	Arctic	Arctic

Taxonmaps

69479

Global distribution of 16S sequence DQ007436 (>99% sequence identity) for Paraglaciecola psychrophila from Microbeatlas

Aquatic Samples	8918
Soil Samples	181
Animal Samples	402
Plant Samples	88
Total Samples	9589

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
36582	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM34763v1 assembly for Paraglaciecola psychrophila 170	complete	GCA_000347635		2545824640	1129794	93.97
67770	ASM31507v1 assembly for Paraglaciecola psychrophila 170	contig	GCA_000315075	1129794.3	2541047515	1129794	56.47

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Glaciecola psychrophila strain 170 16S ribosomal RNA gene, partial sequence	DQ007436	1509		326544

GC content

@ref	GC-content (mol%)	Method
67770	40.3	genome sequence analysis
67770	42.9	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM34763v1 assembly for Paraglaciecola psychrophila 170
NCBI: GCA_000347635

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.65	no
125439	motility	BacteriaNetⓘ	yes	50.55	no
125439	gram_stain	BacteriaNetⓘ	negative	96.79	no
125439	spore_formation	BacteriaNetⓘ	no	98.82	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paraglaciecola psychrophila 170 170
NCBI: GCA_000315075.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	94.05	no
125438	aerobic	aerobicⓘ	yes	71.94	no
125438	spore-forming	spore-formingⓘ	no	89.66	no
125438	thermophilic	thermophileⓘ	no	96.23	yes
125438	flagellated	motile2+ⓘ	yes	84.82	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paraglaciecola marina sp. nov., isolated from marine alga (Sargassum natans (L.) Gaillon).	Wang Y, Zhang Y, Liu T, Zhu X, Ma J, Su X, Kang J, Guo C	Int J Syst Evol Microbiol	10.1099/ijsem.0.004132	2020
Phylogeny	Glaciecola amylolytica sp. nov., an amylase-producing bacterium isolated from seawater.	Xiao YK, Yan ZF, Kim Y, Lee HM, Trinh H, Yang JE, Won KH, Yi TH, Kook M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003222	2019
Phylogeny	Glaciecola psychrophila sp. nov., a novel psychrophilic bacterium isolated from the Arctic.	Zhang DC, Yu Y, Chen B, Wang HX, Liu HC, Dong XZ, Zhou PJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64575-0	2006

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36582	Collection of Institut Pasteur ; Curators of the CIP; CIP 109542
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Paraglaciecola psychrophila (CIP 109542, JCM 13954, CGMCC 1.6130)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000347635

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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