Strain identifier

BacDive ID: 136549

Type strain: No

Species: Pseudomonas fulva

Strain Designation: KS 0029

Strain history: CIP <- 2000, CCUG <- K. Komagata, IAM, Tokyo, Japan: strain KS 0029

NCBI tax ID(s): 47880 (species)

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General

@ref: 35979

BacDive-ID: 136549

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Pseudomonas fulva KS 0029 is an aerobe, mesophilic, Gram-negative bacterium of the family Pseudomonadaceae.

NCBI tax id

  • NCBI tax id: 47880
  • Matching level: species

strain history

@refhistory
67770K. Komagata KS 0029 (Pseudomonas fulva) <-- AJ 2125 <-- IAM 1587 <-- H. Iizuka and K. Komagata CB10.
35979CIP <- 2000, CCUG <- K. Komagata, IAM, Tokyo, Japan: strain KS 0029

doi: 10.13145/bacdive136549.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas fulva
  • full scientific name: Pseudomonas fulva Iizuka and Komagata 1963 (Approved Lists 1980)

@ref: 35979

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas fulva

strain designation: KS 0029

type strain: no

Morphology

cell morphology

  • @ref: 35979
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 35979
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35979MEDIUM 309 - for Flexibacter japonensisyesDistilled water make up to (1000.000 ml);Sodium chloride (5.000 g);Agar(15.000 g);Peptone (5.000 g);Beef extract (3.000 g)
35979CIP Medium 35yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=35

culture temp

@refgrowthtypetemperaturerange
35979positivegrowth30mesophilic
45736positivegrowth30mesophilic
67770positivegrowth30mesophilic
35979positivegrowth5-41

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
45736aerobe
35979obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
35979NaClpositivegrowth0-6 %
35979NaClnogrowth8 %
35979NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: Q-9

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
3597916947citrate+carbon source
359794853esculin-hydrolysis
3597917632nitrate-reduction
3597916301nitrite-reduction
3597917632nitrate-respiration

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
3597935581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
35979oxidase-
35979beta-galactosidase-3.2.1.23
35979alcohol dehydrogenase-1.1.1.1
35979gelatinase-
35979amylase+
35979DNase-
35979caseinase-3.4.21.50
35979catalase+1.11.1.6
35979tween esterase-
35979lecithinase-
35979lipase-
35979lysine decarboxylase-4.1.1.18
35979ornithine decarboxylase-4.1.1.17
35979protease-
35979tryptophan deaminase-
35979urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    45736C10:00.210
    45736C11:00.211
    45736C12:010.112
    45736C13:00.213
    45736C14:00.814
    45736C15:01.615
    45736C16:016.616
    45736C17:00.617
    45736C18:00.318
    45736C10:0 3OH4.111.423
    45736C11:0 3OH0.312.441
    45736C12:0 3OH3.113.455
    45736C13:0 ISO 2OH0.113.814
    45736C15:1 ω6c0.414.856
    45736C16:0 iso0.515.626
    45736C16:1 ω7c23.915.819
    45736C17:0 iso0.116.629
    45736C17:1 ω6c0.316.862
    45736C17:1 ω8c116.792
    45736C18:1 ω7c /12t/9t35.117.824
    45736C18:2 ω6,9c/C18:0 ANTE0.217.724
    45736Unidentified0.2
    45736unknown 11.7980.211.798
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
45736-+++-+--+-++--------
35979-+++-+--+-++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
45736--------++++--++-++-+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
35979+++-----------------+-----+----+-+---------++---++++-+++----+-+++--+--++++-+++-++++-+--++++++++++++

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
35979JapanJPNAsia
45736JapanJPNAsiaJapanese paddy
35979JapanJPNAsiaJapanese paddy

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Host#Plants#Herbaceous plants (Grass,Crops)
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_3608.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_64;98_2761;99_3608&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: AB060135
  • Sequence Identity:
  • Total samples: 2786
  • soil counts: 552
  • aquatic counts: 752
  • animal counts: 734
  • plant counts: 748

Safety information

risk assessment

  • @ref: 35979
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Pseudomonas fulva gene for 16S rRNA, partial sequence, strain:IAM 1587AB0469971483ena47880
67770Pseudomonas straminea gene for 16S rRNA, partial sequence, strain: IAM 1587AB0601351483ena47882

GC content

  • @ref: 67770
  • GC-content: 62.1
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 35979

culture collection no.: CIP 106694, CCUG 12537, IAM 1587, JCM 2780, LMG 11723, CB 10, AJ 2125, CGMCC 1.1794, IFO 16640, NBRC 16640, NRIC 0182

straininfo link

  • @ref: 93683
  • straininfo: 8244

literature

  • topic: Phylogeny
  • Pubmed-ID: 12483612
  • title: Recharacterization of Pseudomonas fulva Iizuka and Komagata 1963, and proposals of Pseudomonas parafulva sp. nov. and Pseudomonas cremoricolorata sp. nov.
  • authors: Uchino M, Shida O, Uchimura T, Komagata K
  • journal: J Gen Appl Microbiol
  • DOI: 10.2323/jgam.47.247
  • year: 2001

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35979Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106694Collection of Institut Pasteur (CIP 106694)
45736Curators of the CCUGhttps://www.ccug.se/strain?id=12537Culture Collection University of Gothenburg (CCUG) (CCUG 12537)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
93683Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID8244.1