Name: Pseudomonas fulva KS 0029
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 136549

Type strain:

Species: Pseudomonas fulva

Strain Designation: KS 0029

Culture col. no.: CIP 106694, CCUG 12537, IAM 1587, JCM 2780, LMG 11723, CB 10, AJ 2125, CGMCC 1.1794, IFO 16640, NBRC 16640, NRIC 0182

Strain history: CIP <- 2000, CCUG <- K. Komagata, IAM, Tokyo, Japan: strain KS 0029

NCBI tax ID(s): 47880 (species)

SI-ID 8244

LMG 11723, IAM 1587, JCM 2780, CCUG 12537, CIP 106694, AS 1.1794, IFO 16640, NBRC 16640, CGMCC 1.1794

Other strains from Pseudomonas fulva

P. fulva DSM 17717, IAM 1529, IFO 16637, ... (type strain)
P. fulva DSM 26075
P. fulva JCM 11241, IFO 16639, NBRC 16639
P. fulva JCM 11243, IFO 16638, NBRC 16638

Section

Pseudomonas fulva KS 0029 is an aerobe, mesophilic, Gram-negative bacterium of the family Pseudomonadaceae.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas fulva**
	Full Scientific Name (LPSN)	Pseudomonas fulva Iizuka and Komagata 1963 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #35979]	Gram stain	negative

[Ref.: #35979]	Cell shape	rod-shaped

[Ref.: #35979]	Motility	yes

[Ref.: #35979]	Pigment production	no
[Ref.: #35979]	Pigment name	Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #35979]

Culture medium

MEDIUM 309 - for Flexibacter japonensis

[Ref.: #35979]

Culture medium growth

[Ref.: #35979]

Culture medium composition

expand / minimize

[Ref.: #35979]

Culture medium

CIP Medium 35

[Ref.: #35979]

Culture medium growth

[Ref.: #35979]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #35979]	growth	30 °C
[Ref.: #35979]	growth	5-41 °C
[Ref.: #45736]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #35979]	Temperature range	mesophilic
[Ref.: #45736]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #45736]	Oxygen tolerance	aerobe
[Ref.: #35979]	Oxygen tolerance	obligate aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #35979]	NaCl		growth	0-6	%
[Ref.: #35979]	NaCl	no	growth	8	%
[Ref.: #35979]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #35979]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #35979]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #35979]	nitrate ChEBI	-	reduction
[Ref.: #35979]	nitrate ChEBI	-	respiration
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #35979]	nitrite ChEBI	-	reduction
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #35979]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #35979]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #35979]	amylase	+
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #35979]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #35979]	caseinase	-	3.4.21.50
[Ref.: #35979]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #35979]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #35979]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #35979]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #35979]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #35979]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #35979]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #35979]	oxidase	-
[Ref.: #35979]	protease	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #35979]	tryptophan deaminase	-
[Ref.: #35979]	tween esterase	-
[Ref.: #35979]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #45736]

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	35.1	17.824
C16:1 ω7c	23.9	15.819
C16:0	16.6	16
C12:0	10.1	12
C10:0 3OH	4.1	11.423
C12:0 3OH	3.1	13.455
C15:0	1.6	15
C17:1 ω8c	1	16.792
C14:0	0.8	14
C17:0	0.6	17
C16:0 iso	0.5	15.626
C15:1 ω6c	0.4	14.856
C11:0 3OH	0.3	12.441
C18:0	0.3	18
C17:1 ω6c	0.3	16.862
C18:2 ω6,9c/C18:0 ANTE	0.2	17.724
Unidentified	0.2
C10:0	0.2	10
C13:0	0.2	13
C11:0	0.2	11
unknown 11.798	0.2	11.798
C17:0 iso	0.1	16.629
C13:0 ISO 2OH	0.1	13.814

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #45736]	7196	-	-	-	-	-	-	-	-	+	+	+	+	-	-	+	+	-	+	+	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #35979]	1771	not determinedn.d.	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	+	+	+	+	-	+	+	+	-	-	-	-	+	-	+	+	+	-	-	+	-	-	+	+	+	+	-	+	+	+	-	+	+	+	+	-	+	-	-	+	+	+	+	+	+	+	+	+	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #45736]	3574	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-
[Ref.: #35979]	9726	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #45736]	Sample type/isolated from	Japanese paddy
[Ref.: #45736]	Country	Japan
[Ref.: #45736]	Country ISO 3 Code	JPN
[Ref.: #45736]	Continent	Asia

[Ref.: #35979]	Sample type/isolated from	Japanese paddy
[Ref.: #35979]	Country	Japan
[Ref.: #35979]	Country ISO 3 Code	JPN
[Ref.: #35979]	Continent	Asia

[Ref.: #35979]	Country	Japan
[Ref.: #35979]	Country ISO 3 Code	JPN
[Ref.: #35979]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB060135 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	752
Soil Samples	552
Animal Samples	734
Plant Samples	748
Total Samples	2786

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #35979]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas straminea gene for 16S rRNA, partial sequence, strain: IAM 1587	AB060135	1483	ENA	47882 tax ID
[Ref.: #67770]	Pseudomonas fulva gene for 16S rRNA, partial sequence, strain:IAM 1587	AB046997	1483	ENA	47880 tax ID

[Ref.: #67770]

GC-content

62.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #35979]

Culture collection no.

CIP 106694, CCUG 12537, IAM 1587, JCM 2780, LMG 11723, CB 10, AJ 2125, CGMCC 1.1794, IFO 16640, NBRC 16640, NRIC 0182

[Ref.: #93683]

SI-ID 8244

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Recharacterization of Pseudomonas fulva Iizuka and Komagata 1963, and proposals of Pseudomonas parafulva sp. nov. and Pseudomonas cremoricolorata sp. nov.	Uchino M, Shida O, Uchimura T, Komagata K	J Gen Appl Microbiol	10.2323/jgam.47.247	2001	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#35979 Collection of Institut Pasteur ; Curators of the CIP; CIP 106694
#45736 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12537
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#93683

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID8244.1 )

* These data were automatically processed and therefore are not curated

Change proposal

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