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Strain identifier

BacDive ID: 136459

Type strain: No

Species: Pseudomonas aeruginosa

NCBI tax ID(s): 287 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 35880

BacDive-ID: 136459

keywords: genome sequence, Bacteria, aerobe, mesophilic

description: Pseudomonas aeruginosa CIP 105925 is an aerobe, mesophilic bacterium of the family Pseudomonadaceae.

NCBI tax id

  • NCBI tax id: 287
  • Matching level: species

doi: 10.13145/bacdive136459.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas aeruginosa
  • full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium aeruginosum

@ref: 35880

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas aeruginosa

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes94.073
6948099.121negative

Culture and growth conditions

culture medium

  • @ref: 35880
  • name: MEDIUM 3 - Columbia agar
  • growth: yes
  • composition: Columbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
35880positivegrowth30mesophilic
59006positivegrowth30-37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 59006
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 95.456

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 93.84

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    59006C12:0412
    59006C14:00.814
    59006C15:00.515
    59006C16:024.816
    59006C18:00.418
    59006C10:0 3OH3.811.423
    59006C12:0 2OH4.913.178
    59006C12:0 3OH3.213.455
    59006C16:1 ω7c17.515.819
    59006C18:1 ω7c /12t/9t38.417.824
    59006C18:1 ω9c0.517.769
    59006C18:2 ω6,9c/C18:0 ANTE0.617.724
    59006C19:0 CYCLO ω8c0.618.9
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
59006+--+--+-+--++-+++++-+

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas aeruginosa ATCC 13388GCA_001373675contigncbi287
66792Pseudomonas aeruginosa strain ATCC 13388287.1878wgspatric287
66792Escherichia coli MOD1-EC6692GCA_002522715contigpatric562

External links

@ref: 35880

culture collection no.: CIP 105925, ATCC 13388, CCUG 50823

straininfo link

@refpassport
20218http://www.straininfo.net/strains/96899
20218http://www.straininfo.net/strains/16521

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
35880Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17998 Collection of Institut Pasteur (CIP 105925)
59006Curators of the CCUGhttps://www.ccug.se/strain?id=50823Culture Collection University of Gothenburg (CCUG) (CCUG 50823)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes