Strain identifier

BacDive ID: 136180

Type strain: No

Species: Vibrio vulnificus

Strain history: CIP <- 1988, NCIB <- 1979, M. Nishibuchi: strain ES-7601, Vibrio sp.

NCBI tax ID(s): 672 (species)

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General

@ref: 35507

BacDive-ID: 136180

keywords: genome sequence, Bacteria, facultative anaerobe, mesophilic, motile

description: Vibrio vulnificus CIP 103196 is a facultative anaerobe, mesophilic, motile bacterium of the family Vibrionaceae.

NCBI tax id

  • NCBI tax id: 672
  • Matching level: species

strain history

  • @ref: 35507
  • history: CIP <- 1988, NCIB <- 1979, M. Nishibuchi: strain ES-7601, Vibrio sp.

doi: 10.13145/bacdive136180.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio vulnificus
  • full scientific name: Vibrio vulnificus (Reichelt et al. 1979) Farmer 1980

  • synonyms

    • @ref: 20215
    • synonym: Beneckea vulnifica

@ref: 35507

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio vulnificus

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes97.226
6948099.984negative
35507yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35507MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
35507CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
35507positivegrowth30mesophilic
35507positivegrowth15-41
35507nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 35507
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.987

halophily

@refsaltgrowthtested relationconcentration
35507NaClpositivegrowth2-6 %
35507NaClnogrowth0 %
35507NaClnogrowth8 %
35507NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
35507citrate-carbon source16947
35507esculin+hydrolysis4853
35507glucose+fermentation17234
35507lactose-fermentation17716
35507nitrate+reduction17632
35507nitrite-reduction16301
35507sodium thiosulfate-builds gas from132112
35507glucose+degradation17234
35507nitrate+respiration17632

antibiotic resistance

  • @ref: 35507
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 35507
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3550715688acetoin-
3550717234glucose-

enzymes

@refvalueactivityec
35507oxidase+
35507beta-galactosidase-3.2.1.23
35507alcohol dehydrogenase-1.1.1.1
35507gelatinase+
35507amylase+
35507DNase+
35507caseinase+3.4.21.50
35507catalase+1.11.1.6
35507tween esterase+
35507gamma-glutamyltransferase-2.3.2.2
35507lecithinase+
35507lipase+
35507lysine decarboxylase+4.1.1.18
35507ornithine decarboxylase-4.1.1.17
35507phenylalanine ammonia-lyase+4.3.1.24
35507protease+
35507tryptophan deaminase-
35507urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
35507-++++++---++--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
35507+---+----++++--------++/-+++++---+---++-+-------+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
35507++++-----++----+++++-----------+----------------+++--++----++--------------+--+++-+---+--++++++--++

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
35507JapanJPNAsia
35507JapanJPNAsiaEnvironment, Diseased pond-cultured eels

Safety information

risk assessment

  • @ref: 35507
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio vulnificus ATCC 33147GCA_000764895contigncbi672
66792Vibrio vulnificus ATCC 33147672.93wgspatric672
66792Vibrio vulnificus ATCC 331472651869775draftimg672

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.871no
anaerobicno97.633no
halophileno57.27no
spore-formingno93.89no
glucose-utilyes89.565no
thermophileno99.337yes
flagellatedyes94.498no
motileyes93.657no
aerobicyes77.807no
glucose-fermentyes87.413no

External links

@ref: 35507

culture collection no.: CIP 103196, ATCC 33147, NCIMB 2136

straininfo link

  • @ref: 93409
  • straininfo: 40356

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity16227349Vibrionaceae as a possible source of Qnr-like quinolone resistance determinants.Poirel L, Liard A, Rodriguez-Martinez JM, Nordmann PJ Antimicrob Chemother10.1093/jac/dki3712005Amino Acid Sequence, Anti-Bacterial Agents/*pharmacology, Bacterial Proteins/chemistry/genetics, DNA, Bacterial/chemistry/genetics, Drug Resistance, Bacterial/*genetics, Escherichia coli/drug effects/genetics, *Gene Transfer, Horizontal, *Genes, Bacterial, Microbial Sensitivity Tests, Molecular Sequence Data, Photobacterium/drug effects/genetics, Polymerase Chain Reaction, Quinolones/*pharmacology, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Vibrio parahaemolyticus/drug effects/genetics, Vibrio vulnificus/drug effects/genetics, Vibrionaceae/*drug effects/*geneticsGenetics
Cultivation21515718Comparison of the effects of environmental parameters on growth rates of Vibrio vulnificus biotypes I, II, and III by culture and quantitative PCR analysis.Chase E, Harwood VJAppl Environ Microbiol10.1128/AEM.00135-112011*Bacterial Load, Bacterial Typing Techniques, Culture Media/chemistry, *Environmental Microbiology, Hydrogen-Ion Concentration, Israel, Polymerase Chain Reaction/methods, Sodium Chloride/metabolism, Temperature, Vibrio vulnificus/drug effects/*growth & development/isolation & purification/radiation effectsMetabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35507Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103196Collection of Institut Pasteur (CIP 103196)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
93409Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID40356.1