Strain identifier
BacDive ID: 136000
Type strain: 
Species: Psychrobacter oceani
Strain Designation: 4k5
Strain history: CIP <- 2015, JCM <- 2014, H. Matsuyama, Tokai Univ., Japan: strain 4k5
NCBI tax ID(s): 1462563 (species)
version 8.1 (current version)
General
@ref: 35295
BacDive-ID: 136000
keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, oval-shaped
description: Psychrobacter oceani 4k5 is a mesophilic, Gram-negative, oval-shaped bacterium of the family Moraxellaceae.
NCBI tax id
- NCBI tax id: 1462563
- Matching level: species
strain history
| @ref | history |
|---|---|
| 67770 | H. Matsuyama; Tokai Univ., Japan; 4k5. |
| 35295 | CIP <- 2015, JCM <- 2014, H. Matsuyama, Tokai Univ., Japan: strain 4k5 |
doi: 10.13145/bacdive136000.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Psychrobacter
- species: Psychrobacter oceani
- full scientific name: Psychrobacter oceani Matsuyama et al. 2015
@ref: 35295
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Psychrobacter
species: Psychrobacter oceani
strain designation: 4k5
type strain: yes
Morphology
cell morphology
- @ref: 35295
- gram stain: negative
- cell shape: oval-shaped
- motility: no
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 35295 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
| 35295 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 35295 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | geographic location | sample type | country |
|---|---|---|---|
| 35295 | Pacific Ocean | ||
| 67770 | Sediment of the Pacific Ocean | ||
| 35295 | Environment, Sediment sample | Pacific Ocean |
taxonmaps
- @ref: 69479
- File name: preview.99_4865.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_2757;98_3642;99_4865&stattab=map
- Last taxonomy: Psychrobacter pacificensis subclade
- 16S sequence: AB910522
- Sequence Identity:
- Total samples: 3122
- soil counts: 90
- aquatic counts: 2631
- animal counts: 395
- plant counts: 6
Safety information
risk assessment
- @ref: 35295
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 67770
- description: Psychrobacter oceani gene for 16S ribosomal RNA, partial sequence
- accession: AB910522
- length: 1465
- database: ena
- NCBI tax ID: 1462563
GC content
- @ref: 67770
- GC-content: 45.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 35295
culture collection no.: CIP 110944, JCM 30235, NCIMB 14948
straininfo link
- @ref: 93255
- straininfo: 412649
literature
- topic: Phylogeny
- Pubmed-ID: 25678681
- title: Psychrobacter oceani sp. nov., isolated from marine sediment.
- authors: Matsuyama H, Minami H, Sakaki T, Kasahara H, Watanabe A, Onoda T, Hirota K, Yumoto I
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000118
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Pacific Ocean, *Phylogeny, Psychrobacter/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 35295 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110944 | Collection of Institut Pasteur (CIP 110944) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 93255 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID412649.1 |