Strain identifier

BacDive ID: 135985

Type strain: No

Species: Acetobacter aceti

Strain Designation: 58, A-34

Strain history: CIP <- 1986, IAM <- T. Asai: strain A-34 <- K. Kondo, IFO: strain 58

NCBI tax ID(s): 435 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 35278

BacDive-ID: 135985

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Acetobacter aceti 58 is a mesophilic, Gram-negative bacterium that was isolated from Rice vinegar.

NCBI tax id

  • NCBI tax id: 435
  • Matching level: species

strain history

@refhistory
67770IAM 1802 <-- T. Asai A-34 <-- IFO 3281 <-- K. Kondo 58.
35278CIP <- 1986, IAM <- T. Asai: strain A-34 <- K. Kondo, IFO: strain 58

doi: 10.13145/bacdive135985.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter aceti
  • full scientific name: Acetobacter aceti (Pasteur 1864) Beijerinck 1898 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Mycoderma aceti

@ref: 35278

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter aceti

strain designation: 58, A-34

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.998

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35278MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffiiyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
35278CIP Medium 1yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1

culture temp

@refgrowthtypetemperaturerange
35278positivegrowth30mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.998

observation

  • @ref: 67770
  • observation: quinones: Q-9

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Rice vinegar

taxonmaps

  • @ref: 69479
  • File name: preview.99_2615.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_827;98_2025;99_2615&stattab=map
  • Last taxonomy: Acetobacter
  • 16S sequence: AB680045
  • Sequence Identity:
  • Total samples: 888
  • soil counts: 133
  • aquatic counts: 132
  • animal counts: 499
  • plant counts: 124

Safety information

risk assessment

  • @ref: 35278
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Acetobacter aceti gene for 16S rRNA, partial sequence, strain: NBRC 3281
  • accession: AB680045
  • length: 1413
  • database: ena
  • NCBI tax ID: 435

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter aceti strain NBRC 3281435.8wgspatric435
67770Acetobacter aceti NBRC 3281GCA_002723895contigncbi435

GC content

  • @ref: 67770
  • GC-content: 56.2
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno96.295no
anaerobicno98.649no
halophileno90.592no
spore-formingno95.22no
glucose-utilyes83.863no
aerobicyes92.761no
flagellatedno64.587no
thermophileno96.258yes
motileyes82.963no
glucose-fermentno88.424no

External links

@ref: 35278

culture collection no.: CIP 102998, IAM 1802, IFO 3281, JCM 20268, LMG 1512, NBRC 3281

straininfo link

  • @ref: 93241
  • straininfo: 14539

literature

topicPubmed-IDtitleauthorsjournalyearmeshtopic2DOI
Enzymology1369309Purification of restriction endonuclease from Acetobacter aceti IFO 3281 (AatII) and its properties.Sato H, Suzuki T, Yamada YAgric Biol Chem1990Acetobacter/*enzymology, Base Sequence, Cations/pharmacology, Chromatography, Chromatography, Gel, DNA Restriction Enzymes/chemistry/*isolation & purification/metabolism, DNA, Viral/metabolism, Deoxyribonucleases, Type II Site-Specific/chemistry/*isolation & purification/metabolism, Electrophoresis, Polyacrylamide Gel, Hot Temperature, Hydrogen-Ion Concentration, Isoelectric Focusing, Molecular Sequence Data, Molecular Weight, Plasmids, StreptomycinMetabolism
Enzymology6292849New restriction endonucleases from Acetobacter aceti and Bacillus aneurinolyticus.Sugisaki H, Maekawa Y, Kanazawa S, Takanami MNucleic Acids Res1982Acetobacter/*enzymology, Bacillus/*enzymology, Base Sequence, DNA Restriction Enzymes/isolation & purification/*metabolism, Plasmids, Substrate SpecificityPhylogeny10.1093/nar/10.19.5747
Metabolism12898066Growth characteristics and oxidative capacity of Acetobacter aceti IFO 3281: implications for L-ribulose production.Kylma AK, Granstrom T, Leisola MAppl Microbiol Biotechnol2003Acetic Acid/metabolism, Acetobacter/enzymology/*growth & development/*metabolism, Biomass, Bioreactors, Biotransformation, Carbon Dioxide/metabolism, Cell Membrane/metabolism, Cell-Free System/metabolism, Culture Media/chemistry, Enzymes/metabolism, Ethanol/metabolism, Glycerol/metabolism, Kinetics, Oxidation-Reduction, Oxygen Consumption, Pentoses/*metabolism, Ribitol/*metabolism, Succinic Acid/metabolismEnzymology10.1007/s00253-003-1406-4
16232643Biochemical preparation of L-ribose and L-arabinose from ribitol: a new approach.Ahmed Z, Shimonishi T, Bhuiyan SH, Utamura M, Takada G, Izumori KJ Biosci Bioeng199910.1016/s1389-1723(99)80225-4
Biotechnology16232684Production of D-lyxose from D-glucose by microbial and enzymatic reactions.Ahmed Z, Sasahara H, Bhuiyan SH, Saiki T, Shimonishi T, Takada G, Izumori KJ Biosci Bioeng199910.1016/s1389-1723(00)87100-5

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35278Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102998Collection of Institut Pasteur (CIP 102998)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
93241Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID14539.1