Strain identifier
BacDive ID: 135985
Type strain: 
Species: Acetobacter aceti
Strain Designation: 58, A-34
Strain history: CIP <- 1986, IAM <- T. Asai: strain A-34 <- K. Kondo, IFO: strain 58
NCBI tax ID(s): 435 (species)
version 9.3 (current version)
General
@ref: 35278
BacDive-ID: 135985
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Acetobacter aceti 58 is a mesophilic, Gram-negative bacterium that was isolated from Rice vinegar.
NCBI tax id
- NCBI tax id: 435
- Matching level: species
strain history
| @ref | history |
|---|---|
| 67770 | IAM 1802 <-- T. Asai A-34 <-- IFO 3281 <-- K. Kondo 58. |
| 35278 | CIP <- 1986, IAM <- T. Asai: strain A-34 <- K. Kondo, IFO: strain 58 |
doi: 10.13145/bacdive135985.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter aceti
- full scientific name: Acetobacter aceti (Pasteur 1864) Beijerinck 1898 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Mycoderma aceti
@ref: 35278
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter aceti
strain designation: 58, A-34
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | negative | 98.3 |
| 125438 | negative | 97.833 |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 35278 | MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii | yes | Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g) | |
| 35278 | CIP Medium 1 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1 |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 35278 | positive | growth | 30 |
| 67770 | positive | growth | 25 |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | no | 99 |
| 125438 | no | 93.512 |
observation
- @ref: 67770
- observation: quinones: Q-9
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Rice vinegar
taxonmaps
- @ref: 69479
- File name: preview.99_2615.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_827;98_2025;99_2615&stattab=map
- Last taxonomy: Acetobacter
- 16S sequence: AB680045
- Sequence Identity:
- Total samples: 888
- soil counts: 133
- aquatic counts: 132
- animal counts: 499
- plant counts: 124
Safety information
risk assessment
- @ref: 35278
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Acetobacter aceti gene for 16S rRNA, partial sequence, strain: NBRC 3281 | AB680045 | 1413 | nuccore | 435 |
| 124043 | Acetobacter aceti 16S rRNA, partial sequence. | AB003968 | 155 | nuccore | 435 |
| 124043 | Acetobacter aceti genes for 16S rRNA, 16S-23S rRNA ITS, and 23S rRNA, partial and complete sequences. | AB161358 | 923 | nuccore | 435 |
| 124043 | Acetobacter aceti partial 16S rRNA gene, strain LMG 1512 | AJ012545 | 694 | nuccore | 435 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetobacter aceti strain NBRC 3281 | 435.8 | wgs | patric | 435 |
| 67770 | Acetobacter aceti NBRC 3281 | GCA_002723895 | contig | ncbi | 435 |
GC content
- @ref: 67770
- GC-content: 56.2
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.833 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.731 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93.512 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.369 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 80.873 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 70.145 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 77.3 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 98.3 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 75.6 |
External links
@ref: 35278
culture collection no.: CIP 102998, IAM 1802, IFO 3281, JCM 20268, LMG 1512, NBRC 3281
straininfo link
- @ref: 93241
- straininfo: 14539
literature
| topic | Pubmed-ID | title | authors | journal | year | mesh | topic2 | DOI |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 1369309 | Purification of restriction endonuclease from Acetobacter aceti IFO 3281 (AatII) and its properties. | Sato H, Suzuki T, Yamada Y | Agric Biol Chem | 1990 | Acetobacter/*enzymology, Base Sequence, Cations/pharmacology, Chromatography, Chromatography, Gel, DNA Restriction Enzymes/chemistry/*isolation & purification/metabolism, DNA, Viral/metabolism, Deoxyribonucleases, Type II Site-Specific/chemistry/*isolation & purification/metabolism, Electrophoresis, Polyacrylamide Gel, Hot Temperature, Hydrogen-Ion Concentration, Isoelectric Focusing, Molecular Sequence Data, Molecular Weight, Plasmids, Streptomycin | Metabolism | |
| Enzymology | 6292849 | New restriction endonucleases from Acetobacter aceti and Bacillus aneurinolyticus. | Sugisaki H, Maekawa Y, Kanazawa S, Takanami M | Nucleic Acids Res | 1982 | Acetobacter/*enzymology, Bacillus/*enzymology, Base Sequence, DNA Restriction Enzymes/isolation & purification/*metabolism, Plasmids, Substrate Specificity | Phylogeny | 10.1093/nar/10.19.5747 |
| Metabolism | 12898066 | Growth characteristics and oxidative capacity of Acetobacter aceti IFO 3281: implications for L-ribulose production. | Kylma AK, Granstrom T, Leisola M | Appl Microbiol Biotechnol | 2003 | Acetic Acid/metabolism, Acetobacter/enzymology/*growth & development/*metabolism, Biomass, Bioreactors, Biotransformation, Carbon Dioxide/metabolism, Cell Membrane/metabolism, Cell-Free System/metabolism, Culture Media/chemistry, Enzymes/metabolism, Ethanol/metabolism, Glycerol/metabolism, Kinetics, Oxidation-Reduction, Oxygen Consumption, Pentoses/*metabolism, Ribitol/*metabolism, Succinic Acid/metabolism | Enzymology | 10.1007/s00253-003-1406-4 |
| 16232643 | Biochemical preparation of L-ribose and L-arabinose from ribitol: a new approach. | Ahmed Z, Shimonishi T, Bhuiyan SH, Utamura M, Takada G, Izumori K | J Biosci Bioeng | 1999 | 10.1016/s1389-1723(99)80225-4 | |||
| Biotechnology | 16232684 | Production of D-lyxose from D-glucose by microbial and enzymatic reactions. | Ahmed Z, Sasahara H, Bhuiyan SH, Saiki T, Shimonishi T, Takada G, Izumori K | J Biosci Bioeng | 1999 | 10.1016/s1389-1723(00)87100-5 |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 35278 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102998 | Collection of Institut Pasteur (CIP 102998) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 93241 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID14539.1 | |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |