Strain identifier
BacDive ID: 13580
Type strain:
Species: Agrobacterium radiobacter
Strain history: CIP <- 1995, ATCC <- NCIB <- Lab. Microbiol., Delft: strain EX 3.24.2
NCBI tax ID(s): 1336745 (strain), 358 (species)
General
@ref: 9167
BacDive-ID: 13580
DSM-Number: 30147
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, human pathogen
description: Agrobacterium radiobacter DSM 30147 is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from Ditch water.
NCBI tax id
NCBI tax id | Matching level |
---|---|
358 | species |
1336745 | strain |
strain history
@ref | history |
---|---|
9167 | <- ATCC <- NCIB <- Lab. Microbiol. Delft, EX 3.24.2 (L 624) |
67770 | IAM 12048 <-- ATCC 19358 <-- NCIB 9042 <-- Lab. Micorbiol., Delft; EX3.24.2. |
122119 | CIP <- 1995, ATCC <- NCIB <- Lab. Microbiol., Delft: strain EX 3.24.2 |
doi: 10.13145/bacdive13580.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Agrobacterium
- species: Agrobacterium radiobacter
- full scientific name: Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bacillus radiobacter 20215 Rhizobium radiobacter 20215 Beijerinckia fluminensis
@ref: 9167
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhizobiaceae
genus: Agrobacterium
species: Agrobacterium radiobacter
full scientific name: Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 emend. Zhang et al. 2014
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 99.951 | ||
122119 | negative | rod-shaped | yes |
colony morphology
- @ref: 9167
- incubation period: 2-3 days
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
37042 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
9167 | NUTRIENT AGAR (DSMZ Medium 1) | yes | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | https://mediadive.dsmz.de/medium/1 |
122119 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 | |
122119 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
37042 | positive | growth | 30 | mesophilic |
9167 | positive | growth | 30 | mesophilic |
44648 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
122119 | positive | growth | 30 | mesophilic |
122119 | no | growth | 5 | psychrophilic |
122119 | no | growth | 10 | psychrophilic |
122119 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
44648 | aerobe |
122119 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.999 |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | + | builds acid from | 18287 |
68371 | D-fucose | + | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | + | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | - | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
68369 | malate | + | assimilation | 25115 |
68369 | decanoate | - | assimilation | 27689 |
68369 | gluconate | + | assimilation | 24265 |
68369 | maltose | + | assimilation | 17306 |
68369 | N-acetylglucosamine | + | assimilation | 59640 |
68369 | D-mannitol | + | assimilation | 16899 |
68369 | D-mannose | + | assimilation | 16024 |
68369 | L-arabinose | + | assimilation | 30849 |
68369 | D-glucose | + | assimilation | 17634 |
68369 | gelatin | - | hydrolysis | 5291 |
68369 | esculin | + | hydrolysis | 4853 |
68369 | urea | + | hydrolysis | 16199 |
68369 | arginine | - | hydrolysis | 29016 |
68369 | D-glucose | - | fermentation | 17634 |
68369 | tryptophan | - | energy source | 27897 |
122119 | esculin | + | hydrolysis | 4853 |
122119 | nitrate | + | reduction | 17632 |
122119 | nitrite | + | reduction | 16301 |
122119 | sodium thiosulfate | + | builds gas from | 132112 |
122119 | glucose | +/- | degradation | 17234 |
antibiotic resistance
- @ref: 122119
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68369 | 35581 | indole | no |
122119 | 35581 | indole | no |
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
9167 | catalase | + | 1.11.1.6 |
9167 | cytochrome-c oxidase | + | 1.9.3.1 |
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | + | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
122119 | oxidase | + | |
122119 | beta-galactosidase | + | 3.2.1.23 |
122119 | alcohol dehydrogenase | - | 1.1.1.1 |
122119 | gelatinase | - | |
122119 | DNase | - | |
122119 | caseinase | - | 3.4.21.50 |
122119 | catalase | + | 1.11.1.6 |
122119 | tween esterase | + | |
122119 | lecithinase | - | |
122119 | lysine decarboxylase | - | 4.1.1.18 |
122119 | ornithine decarboxylase | - | 4.1.1.17 |
122119 | urease | + | 3.5.1.5 |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9167 | - | +/- | - | - | - | + | +/- | - | + | - | - | - | - | - | - | + | +/- | + | - | - |
122119 | - | + | + | + | + | + | + | + | + | - | - | - | - | - | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9167 | +/- | - | - | - | + | + | - | + | + | + | + | + | + | + | + | - | +/- | + | - | - | |
9167 | - | - | - | - | + | + | - | + | + | + | + | + | + | + | + | - | - | + | - | - | + |
9167 | + | - | - | - | + | + | - | + | + | + | + | + | + | + | + | - | - | + | - | - | + |
9167 | - | - | - | - | + | + | - | + | + | + | + | + | + | + | + | - | +/- | + | - | - | + |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122119 | - | - | - | +/- | +/- | +/- | - | +/- | +/- | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | +/- | +/- | - | - | - | - | - | - | - | - | + | - | + | + | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122119 | + | + | + | + | + | - | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | - | + | - | + | - | - | - | - | - | - | + | + | - | + | - | - | + | + | + | - | - | + | + | - | + | + | + | - | - | - | - | - | - | + | - | + | - | + | - | - | - | + | + | - | - | - | - | - | + | - | + | + | + | + | - | + | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 44648
- sample type: Ditch water
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Freshwater |
#Engineered | #Built environment |
taxonmaps
- @ref: 69479
- File name: preview.99_6.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_6;97_6;98_6;99_6&stattab=map
- Last taxonomy: Agrobacterium
- 16S sequence: AM181758
- Sequence Identity:
- Total samples: 5894
- soil counts: 595
- aquatic counts: 822
- animal counts: 3746
- plant counts: 731
Safety information
risk assessment
@ref | pathogenicity human | pathogenicity plant | biosafety level | biosafety level comment |
---|---|---|---|---|
9167 | yes, in single cases | yes | 1 | Risk group (German classification) |
122119 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Agrobacterium radiobacter 16S rRNA gene, strain ATCC19358 | AJ389904 | 1437 | ena | 358 |
20218 | Agrobacterium tumefaciens strain LMG 140 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence and 23S ribosomal RNA gene, partial sequence | AF541973 | 1086 | ena | 358 |
20218 | Agrobacterium radiobacter partial 16S rRNA gene, strain LMG 140 | AM181758 | 1426 | ena | 358 |
20218 | Agrobacterium tumefaciens gene for 16S rRNA, partial sequence, strain: NBRC 13532 | AB680423 | 1410 | ena | 358 |
9167 | Agrobacterium tumefaciens genes for 16S rRNA, tRNA-Ile, tRNA-Ala, 23S rRNA 150-b fragment, IVS, 23S rRNA 1.3-kb fragment A, partial and complete sequence, strain: IAM 12048 | AB247615 | 2738 | ena | 358 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Agrobacterium radiobacter DSM 30147 | 1336745.4 | wgs | patric | 1336745 |
66792 | Agrobacterium tumefaciens strain CCUG 3354 | 358.266 | wgs | patric | 358 |
66792 | Agrobacterium tumefaciens strain LMG 140 | 358.128 | wgs | patric | 358 |
66792 | Agrobacterium tumefaciens strain NCIB 9042 | 358.277 | wgs | patric | 358 |
66792 | Agrobacterium tumefaciens strain NCPPB 3001 | 358.72 | wgs | patric | 358 |
66792 | Agrobacterium radiobacter DSM 30147 | 2571042120 | draft | img | 1336745 |
66792 | Agrobacterium tumefaciens LMG 140 | 2868989325 | draft | img | 358 |
66792 | Agrobacterium sp. NCIB 9042 | 2916111912 | draft | img | 2756240 |
67770 | Agrobacterium radiobacter DSM 30147 | GCA_000421945 | contig | ncbi | 1336745 |
67770 | Agrobacterium sp. NCIB 9042 | GCA_011684005 | contig | ncbi | 2756240 |
67770 | Agrobacterium tumefaciens NCPPB 3001 | GCA_001541305 | contig | ncbi | 358 |
67770 | Agrobacterium tumefaciens LMG 140 | GCA_002008215 | contig | ncbi | 358 |
67770 | Agrobacterium tumefaciens CCUG 3354 | GCA_008801385 | contig | ncbi | 358 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 77.203 | no |
gram-positive | no | 97.589 | no |
anaerobic | no | 98.288 | yes |
halophile | no | 89.787 | no |
spore-forming | no | 95.782 | no |
thermophile | no | 99.49 | no |
glucose-util | yes | 89.588 | yes |
aerobic | yes | 93.831 | yes |
flagellated | no | 75.248 | no |
glucose-ferment | no | 89.102 | no |
External links
@ref: 9167
culture collection no.: DSM 30147, ATCC 19358, IFO 13532, NBRC 13532, NCIB 9042, CCUG 3354, IAM 12048, EX 3.24.2 (L 624), JCM 20371, BCRC 10372, CECT 4112, CIP 104325, HAMBI 1814, ICMP 5785, KACC 10798, KCTC 22091, LMG 140, NCCB 27005, NCIMB 9042, NCPPB 3001, EX 3.24.2
straininfo link
- @ref: 82767
- straininfo: 311029
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 15118811 | Purification and characterization of 2,6-dihydroxybenzoate decarboxylase reversibly catalyzing nonoxidative decarboxylation. | Yoshida T, Hayakawa Y, Matsui T, Nagasawa T | Arch Microbiol | 10.1007/s00203-004-0668-2 | 2004 | Agrobacterium tumefaciens/*enzymology, Bicarbonates/metabolism, Carboxy-Lyases/chemistry/*isolation & purification/*metabolism, Coenzymes, Decarboxylation, Enzyme Stability, Hydrogen-Ion Concentration, Hydroxybenzoates/*metabolism, Kinetics, Molecular Weight, Potassium Compounds/metabolism, Protein Subunits/chemistry, Resorcinols/metabolism, Stereoisomerism, Substrate Specificity | Metabolism |
Phylogeny | 17013548 | Phylogenetic assignment and mechanism of action of a crop growth promoting Rhizobium radiobacter strain used as a biofertiliser on graminaceous crops in Russia. | Humphry DR, Andrews M, Santos SR, James EK, Vinogradova LV, Perin L, Reis VM, Cummings SP | Antonie Van Leeuwenhoek | 10.1007/s10482-006-9100-z | 2007 | Agrobacterium tumefaciens/*classification/genetics/*physiology, Bacterial Proteins/genetics, Bacterial Typing Techniques, Crops, Agricultural/growth & development/*microbiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Genes, rRNA, Gibberellins/biosynthesis, Hordeum/growth & development/microbiology, Indoleacetic Acids/metabolism, Molecular Sequence Data, Nitrogen Fixation/genetics, Nucleic Acid Hybridization, Oxidoreductases/genetics, Peptide Elongation Factor G/genetics, Phylogeny, Plant Diseases/microbiology, Plant Shoots/growth & development, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Solanum tuberosum/microbiology | Genetics |
Biotechnology | 18600699 | Modeling growth and succinoglucan production by Agrobacterium radiobacter NCIB 9042 in batch cultures. | Dussap CG, De Vita D, Pons A | Biotechnol Bioeng | 10.1002/bit.260380109 | 1991 | ||
Phylogeny | 20453105 | Rhizobium borbori sp. nov., aniline-degrading bacteria isolated from activated sludge. | Zhang GX, Ren SZ, Xu MY, Zeng GQ, Luo HD, Chen JL, Tan ZY, Sun GP | Int J Syst Evol Microbiol | 10.1099/ijs.0.022228-0 | 2010 | Aniline Compounds/*metabolism, Bacterial Typing Techniques, Cluster Analysis, DNA Fingerprinting, DNA Transposable Elements, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer/chemistry/genetics, Fatty Acids/analysis, Genotype, Glutamate-Ammonia Ligase, Molecular Sequence Data, Molecular Typing, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Rec A Recombinases, Rhizobium/*classification/genetics/isolation & purification/*metabolism, Sequence Analysis, DNA, Sewage/*microbiology | Genetics |
Phylogeny | 20584817 | Rhizobium rosettiformans sp. nov., isolated from a hexachlorocyclohexane dump site, and reclassification of Blastobacter aggregatus Hirsch and Muller 1986 as Rhizobium aggregatum comb. nov. | Kaur J, Verma M, Lal R | Int J Syst Evol Microbiol | 10.1099/ijs.0.017491-0 | 2010 | Bradyrhizobiaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Fatty Acids/metabolism, Hexachlorocyclohexane/*metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/*isolation & purification/metabolism, Water Pollutants, Chemical/*metabolism | Metabolism |
Phylogeny | 21148676 | Rhizobium pusense sp. nov., isolated from the rhizosphere of chickpea (Cicer arietinum L.). | Panday D, Schumann P, Das SK | Int J Syst Evol Microbiol | 10.1099/ijs.0.028407-0 | 2010 | Base Composition, Cicer/*microbiology, DNA, Bacterial/genetics, Fatty Acids/metabolism, India, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/*isolation & purification/metabolism, *Rhizosphere, *Soil Microbiology | Metabolism |
Phylogeny | 22463808 | Rhizobium nepotum sp. nov. isolated from tumors on different plant species. | Pulawska J, Willems A, De Meyer SE, Sule S | Syst Appl Microbiol | 10.1016/j.syapm.2012.03.001 | 2012 | Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hungary, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Poland, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/*isolation & purification, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA | Genetics |
25197445 | Genomic analysis of Agrobacterium radiobacter DSM 30147(T) and emended description of A. radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980) emend. Sawada et al. 1993. | Zhang L, Li X, Zhang F, Wang G | Stand Genomic Sci | 10.4056/sigs.4688352 | 2014 | |||
Phylogeny | 28386665 | Agrobacterium deltaense sp. nov., an endophytic bacteria isolated from nodule of Sesbania cannabina. | Yan J, Li Y, Han XZ, Chen WF, Zou WX, Xie Z, Li M | Arch Microbiol | 10.1007/s00203-017-1367-0 | 2017 | *Agrobacterium/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition/genetics, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Genes, Essential/genetics, Genome, Bacterial/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Sesbania/*microbiology | Genetics |
Phylogeny | 28629499 | Agrobacterium salinitolerans sp. nov., a saline-alkaline-tolerant bacterium isolated from root nodule of Sesbania cannabina. | Yan J, Li Y, Yan H, Chen WF, Zhang X, Wang ET, Han XZ, Xie ZH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001885 | 2017 | Agrobacterium/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Sesbania/*microbiology | Transcriptome |
30775173 | Improved genome of Agrobacterium radiobacter type strain provides new taxonomic insight into Agrobacterium genomospecies 4. | Gan HM, Lee MVL, Savka MA | PeerJ | 10.7717/peerj.6366 | 2019 | |||
Phylogeny | 32331293 | Isolation, Identification and Characterization of Endophytic Bacterium Rhizobium oryzihabitans sp. nov., from Rice Root with Biotechnological Potential in Agriculture. | Zhao J, Zhao X, Wang J, Gong Q, Zhang X, Zhang G | Microorganisms | 10.3390/microorganisms8040608 | 2020 | ||
Phylogeny | 32915125 | Strain ATCC 4720(T) is the authentic type strain of Agrobacterium tumefaciens, which is not a later heterotypic synonym of Agrobacterium radiobacter. | Velazquez E, Flores-Felix JD, Sanchez-Juanes F, Igual JM, Peix A | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004443 | 2020 | Agrobacterium tumefaciens/*classification, *Phylogeny, Terminology as Topic | |
Stress | 33096177 | Characterization and rheological properties analysis of the succinoglycan produced by a high-yield mutant of Rhizobium radiobacter ATCC 19358. | Gao H, Yang L, Tian J, Huang L, Huang D, Zhang W, Xie F, Niu Y, Jin M, Jia C, Zou C, Huang J, Chang Z, Yang X, Jiang D | Int J Biol Macromol | 10.1016/j.ijbiomac.2020.10.087 | 2020 | Agrobacterium tumefaciens/genetics/*metabolism, Carbohydrate Conformation, Elastic Modulus, Hot Temperature, Mutation, Polysaccharides, Bacterial/biosynthesis/*chemistry, Rheology, *Viscosity | Biotechnology |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9167 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30147) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30147 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
37042 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/16221 | ||||
44648 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 3354) | https://www.ccug.se/strain?id=3354 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68369 | Automatically annotated from API 20NE | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
82767 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID311029.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
122119 | Curators of the CIP | Collection of Institut Pasteur (CIP 104325) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104325 |