Strain identifier
BacDive ID: 135559
Type strain: 
Species: Chryseobacterium ginsenosidimutans
Strain history: CIP <- 2012, JCM <- 2010, W.T. Im,, Kyung Hee Univ., Korea: strain THG 15
NCBI tax ID(s): 687846 (species)
version 8.1 (current version)
General
@ref: 34728
BacDive-ID: 135559
keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped
description: Chryseobacterium ginsenosidimutans CIP 110378 is a mesophilic, Gram-negative, rod-shaped bacterium of the family Weeksellaceae.
NCBI tax id
- NCBI tax id: 687846
- Matching level: species
strain history
| @ref | history |
|---|---|
| 67770 | W.-T. Im THG 15. |
| 34728 | CIP <- 2012, JCM <- 2010, W.T. Im,, Kyung Hee Univ., Korea: strain THG 15 |
doi: 10.13145/bacdive135559.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Weeksellaceae
- genus: Chryseobacterium
- species: Chryseobacterium ginsenosidimutans
- full scientific name: Chryseobacterium ginsenosidimutans Im et al. 2011
@ref: 34728
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Chryseobacterium
species: Chryseobacterium ginsenosidimutans
type strain: yes
Morphology
cell morphology
- @ref: 34728
- gram stain: negative
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 34728 | MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati | yes | Distilled water make up to (1000.000 ml);R2A agar (18.200 g) | |
| 34728 | CIP Medium 566 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 34728 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type | host species |
|---|---|---|---|---|---|---|
| 34728 | Okcheon province | Republic of Korea | KOR | Asia | ||
| 67770 | Republic of Korea | KOR | Asia | Soil of a Rhus vernicifera-cultivated field in Okcheon Province | Rhus vernicifera | |
| 34728 | Okcheon | Republic of Korea | KOR | Asia | Environment, Soil of a Rhus vernifera-cultivated field |
taxonmaps
- @ref: 69479
- File name: preview.99_7081.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_206;97_225;98_5207;99_7081&stattab=map
- Last taxonomy: Chryseobacterium
- 16S sequence: GU138380
- Sequence Identity:
- Total samples: 107
- soil counts: 12
- aquatic counts: 19
- animal counts: 65
- plant counts: 11
Safety information
risk assessment
- @ref: 34728
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 67770
- description: Chryseobacterium ginsenosidimutans strain THG 15 16S ribosomal RNA gene, partial sequence
- accession: GU138380
- length: 1382
- database: ena
- NCBI tax ID: 687846
GC content
- @ref: 67770
- GC-content: 35.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 34728
culture collection no.: CIP 110378, JCM 16719, KACC 14527, NRIC 0979, THG 15
straininfo link
- @ref: 92896
- straininfo: 377599
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20656821 | Chryseobacterium ginsenosidimutans sp. nov., a bacterium with ginsenoside-converting activity isolated from soil of a Rhus vernicifera-cultivated field. | Im WT, Yang JE, Kim SY, Yi TH | Int J Syst Evol Microbiol | 10.1099/ijs.0.023614-0 | 2010 | Aerobiosis, Base Composition, Chryseobacterium/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Ginsenosides/*metabolism, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhus/growth & development, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature, beta-Glucosidase/metabolism | Metabolism |
| Phylogeny | 24480907 | Chryseobacterium aahli sp. nov., isolated from lake trout (Salvelinus namaycush) and brown trout (Salmo trutta), and emended descriptions of Chryseobacterium ginsenosidimutans and Chryseobacterium gregarium. | Loch TP, Faisal M | Int J Syst Evol Microbiol | 10.1099/ijs.0.052373-0 | 2014 | Animals, Bacterial Typing Techniques, Base Composition, Bayes Theorem, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes, Michigan, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Trout/*microbiology | Genetics |
| Phylogeny | 25878202 | Chryseobacterium solani sp. nov., isolated from field-grown eggplant rhizosphere soil. | Du J, Ngo HTT, Won K, Kim KY, Jin FX, Yi TH | Int J Syst Evol Microbiol | 10.1099/ijs.0.000266 | 2015 | Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Solanum melongena/*microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 26573006 | Chryseobacterium panacis sp. nov., isolated from ginseng soil. | Singh P, Kim YJ, Farh Mel-A, Dan WD, Kang CH, Yang DC | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0620-2 | 2015 | Base Composition, Chryseobacterium/classification/genetics/*isolation & purification/metabolism, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, Panax/*growth & development, Phylogeny, Republic of Korea, *Soil Microbiology | Metabolism |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 34728 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110378 | Collection of Institut Pasteur (CIP 110378) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 92896 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID377599.1 |