Name: Chryseobacterium ginsenosidimutans CIP 110378
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 135559

Type strain:

Species: Chryseobacterium ginsenosidimutans

Culture col. no.: CIP 110378, JCM 16719, KACC 14527, NRIC 0979, THG 15

Strain history: CIP <- 2012, JCM <- 2010, W.T. Im,, Kyung Hee Univ., Korea: strain THG 15

NCBI tax ID(s): 687846 (species)

SI-ID 377599

JCM 16719, KACC 14527, CIP 110378

Special Collections

Section

Chryseobacterium ginsenosidimutans CIP 110378 is a Gram-negative, rod-shaped bacterium of the family Weeksellaceae.

Gram-negative
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium ginsenosidimutans**
	Full Scientific Name (LPSN)	Chryseobacterium ginsenosidimutans Im et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #34728]	Gram stain	negative

[Ref.: #34728]	Cell shape	rod-shaped

[Ref.: #34728]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #34728]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #34728]

Culture medium growth

[Ref.: #34728]

Culture medium composition

expand / minimize

[Ref.: #34728]

Culture medium

CIP Medium 566

[Ref.: #34728]

Culture medium growth

[Ref.: #34728]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #34728]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil of a Rhus vernicifera-cultivated field in Okcheon Province
[Ref.: #67770]	Host species	Rhus vernicifera
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #34728]	Sample type/isolated from	Environment, Soil of a Rhus vernifera-cultivated field
[Ref.: #34728]	Geographic location (country and/or sea, region)	Okcheon
[Ref.: #34728]	Country	Republic of Korea
[Ref.: #34728]	Country ISO 3 Code	KOR
[Ref.: #34728]	Continent	Asia

[Ref.: #34728]	Geographic location (country and/or sea, region)	Okcheon province
[Ref.: #34728]	Country	Republic of Korea
[Ref.: #34728]	Country ISO 3 Code	KOR
[Ref.: #34728]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence GU138380 (>99% sequence identity) for Chryseobacterium from Microbeatlas

Aquatic Samples	19
Soil Samples	12
Animal Samples	65
Plant Samples	11
Total Samples	107

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #34728]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Chryseobacterium ginsenosidimutans strain THG 15 16S ribosomal RNA gene, partial sequence	GU138380	1382	GenBank ENA	687846 tax ID

[Ref.: #67770]

GC-content

35.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #34728]

Culture collection no.

CIP 110378, JCM 16719, KACC 14527, NRIC 0979, THG 15

[Ref.: #92896]

SI-ID 377599

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium panacis sp. nov., isolated from ginseng soil.	Singh P, Kim YJ, Farh Mel-A, Dan WD, Kang CH, Yang DC	Antonie Van Leeuwenhoek	10.1007/s10482-015-0620-2	2015	*
Phylogeny	Chryseobacterium solani sp. nov., isolated from field-grown eggplant rhizosphere soil.	Du J, Ngo HTT, Won K, Kim KY, Jin FX, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.000266	2015	*
Phylogeny	Chryseobacterium aahli sp. nov., isolated from lake trout (Salvelinus namaycush) and brown trout (Salmo trutta), and emended descriptions of Chryseobacterium ginsenosidimutans and Chryseobacterium gregarium.	Loch TP, Faisal M	Int J Syst Evol Microbiol	10.1099/ijs.0.052373-0	2014	*
Phylogeny	Chryseobacterium ginsenosidimutans sp. nov., a bacterium with ginsenoside-converting activity isolated from soil of a Rhus vernicifera-cultivated field.	Im WT, Yang JE, Kim SY, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.023614-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#34728 Collection of Institut Pasteur ; Curators of the CIP; CIP 110378
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#92896

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID377599.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Chryseobacterium ginsenosidimutans in external resources:
SILVA
BRENDA
PANGAEA
GBIF