Chryseobacterium ginsenosidimutans (CIP 110378, JCM 16719, KACC 14527)

Name: Chryseobacterium ginsenosidimutans (CIP 110378, JCM 16719, KACC 14527)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 135559

Type strain

Culture col. no. CIP 110378 JCM 16719 KACC 14527 NRIC 0979 THG 15

NCBI tax ID(s) 687846

Special Collections JCM CIP

History JCM <-- W.-T. Im THG 15. CIP <- 2012, JCM <- 2010, W.T. Im,, Kyung Hee Univ., Korea: strain THG 15

Links

Chryseobacterium ginsenosidimutans CIP 110378 is a Gram-negative, rod-shaped bacterium of the family Weeksellaceae.

Gram-negative rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 377599

JCM 16719,KACC 14527,CIP 110378

@ref 20215

Last LPSN update 2026-05-29 08:38:35

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium ginsenosidimutans

Full scientific name Chryseobacterium ginsenosidimutans Im et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
34728	negative	rod-shaped
125439	negative			99.308

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
34728	MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati		Distilled water make up to (1000.000 ml);R2A agar (18.200 g)
34728	CIP Medium 566			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
34728	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.072

Spore formation

@ref	Spore formation	Confidence
125439		98.907

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Geographic location
34728			Republic of Korea	KOR	Asia	Okcheon province
67770	Soil of a Rhus vernicifera-cultivated field in Okcheon Province	Rhus vernicifera	Republic of Korea	KOR	Asia
34728	Environment, Soil of a Rhus vernifera-cultivated field		Republic of Korea	KOR	Asia	Okcheon

Taxonmaps

69479

Global distribution of 16S sequence GU138380 (>99% sequence identity) for Chryseobacterium from Microbeatlas

Aquatic Samples	19
Soil Samples	12
Animal Samples	65
Plant Samples	11
Total Samples	107

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
34728	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM2480722v1 assembly for Chryseobacterium ginsenosidimutans THG 15	contig	GCA_024807225	687846.3	2867868581	687846	70.43
124043	ASM3953684v1 assembly for Chryseobacterium ginsenosidimutans JCM 16719	scaffold	GCA_039536845			687846	70.4

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Chryseobacterium ginsenosidimutans strain THG 15 16S ribosomal RNA gene, partial sequence	GU138380	1382		687846

GC content

@ref	GC-content (mol%)	Method
67770	35.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2480722v1 assembly for Chryseobacterium ginsenosidimutans THG 15
NCBI: GCA_024807225

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	99.31	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.07	no
125439	motility	BacteriaNetⓘ	no	84.96	no
125439	spore_formation	BacteriaNetⓘ	no	98.91	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Chryseobacterium yeoncheonense sp. nov., with ginsenoside converting activity isolated from soil of a ginseng field.	Hoang VA, Kim YJ, Nguyen NL, Yang DC.	Arch Microbiol	10.1007/s00203-013-0898-2	2013
Phylogeny	Chryseobacterium ginsengisoli sp. nov., isolated from the rhizosphere of ginseng and emended description of Chryseobacterium gleum.	Nguyen NL, Kim YJ, Hoang VA, Yang DC.	Int J Syst Evol Microbiol	10.1099/ijs.0.045427-0	2013
Phylogeny	Chryseobacterium gwangjuense sp. nov., isolated from soil.	Park YJ, Son HM, Lee EH, Kim JH, Mavlonov GT, Choi KJ, Shin HS, Kook M, Yi TH.	Int J Syst Evol Microbiol	10.1099/ijs.0.052118-0	2013
Phylogeny	Chryseobacterium panacis sp. nov., isolated from ginseng soil.	Singh P, Kim YJ, Farh Mel-A, Dan WD, Kang CH, Yang DC	Antonie Van Leeuwenhoek	10.1007/s10482-015-0620-2	2015
Phylogeny	Chryseobacterium solani sp. nov., isolated from field-grown eggplant rhizosphere soil.	Du J, Ngo HTT, Won K, Kim KY, Jin FX, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.000266	2015
Phylogeny	Chryseobacterium aahli sp. nov., isolated from lake trout (Salvelinus namaycush) and brown trout (Salmo trutta), and emended descriptions of Chryseobacterium ginsenosidimutans and Chryseobacterium gregarium.	Loch TP, Faisal M	Int J Syst Evol Microbiol	10.1099/ijs.0.052373-0	2014
Phylogeny	Chryseobacterium ginsenosidimutans sp. nov., a bacterium with ginsenoside-converting activity isolated from soil of a Rhus vernicifera-cultivated field.	Im WT, Yang JE, Kim SY, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.023614-0	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#34728	Collection of Institut Pasteur ; Curators of the CIP; CIP 110378
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chryseobacterium ginsenosidimutans (CIP 110378, JCM 16719, KACC 14527)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_024807225

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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