Strain identifier

BacDive ID: 135551

Type strain: Yes

Species: Helicobacter bilis

Strain history: CIP <- 1996, ATCC <- J.G. Fox: strain MIT Hb1 <- L. Yan

NCBI tax ID(s): 1408441 (strain), 37372 (species)

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General

@ref: 34711

BacDive-ID: 135551

keywords: genome sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Helicobacter bilis CIP 104752 is a mesophilic, Gram-negative, motile bacterium of the family Helicobacteraceae.

NCBI tax id

NCBI tax idMatching level
37372species
1408441strain

strain history

  • @ref: 34711
  • history: CIP <- 1996, ATCC <- J.G. Fox: strain MIT Hb1 <- L. Yan

doi: 10.13145/bacdive135551.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Helicobacteraceae
  • genus: Helicobacter
  • species: Helicobacter bilis
  • full scientific name: Helicobacter bilis Fox et al. 1997

@ref: 34711

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Helicobacteraceae

genus: Helicobacter

species: Helicobacter bilis

type strain: yes

Morphology

cell morphology

  • @ref: 34711
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 34711

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34711MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
34711CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
34711positivegrowth37mesophilic
34711positivegrowth37-41
34711nogrowth5psychrophilic
34711nogrowth10psychrophilic
34711nogrowth25mesophilic
34711nogrowth30mesophilic
34711nogrowth45thermophilic

Physiology and metabolism

halophily

  • @ref: 34711
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
34711606565hippurate-hydrolysis
3471117632nitrate-reduction
3471116301nitrite-reduction

antibiotic resistance

  • @ref: 34711
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 34711
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
34711oxidase+
34711gelatinase-
34711DNase-
34711catalase+1.11.1.6
34711gamma-glutamyltransferase-2.3.2.2
34711urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
34711-+++------++---+----

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
34711MAUSAUSANorth America
34711MassachusettsUnited States of AmericaUSANorth AmericaAnimal, Mouse, bile

Safety information

risk assessment

  • @ref: 34711
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Helicobacter bilis ATCC 51630GCA_000765785contigncbi37372
66792Helicobacter bilis ATCC 51630GCA_000686565scaffoldncbi1408441
66792Helicobacter apodemus MIT-03-7007135569.3wgspatric135569
66792Helicobacter bilis ATCC 4931437372.6wgspatric37372
66792Helicobacter bilis ATCC 4932037372.7wgspatric37372
66792Helicobacter bilis ATCC 5163037372.4wgspatric37372
66792Helicobacter bilis ATCC 516301408441.3wgspatric1408441
66792Helicobacter bilis Missouri37372.5wgspatric37372
66792Helicobacter bilis strain ATCC 5163037372.30wgspatric37372
66792Helicobacter magdeburgensis MIT 96-1001471858.3wgspatric471858
66792Helicobacter muridarum ST1216.5wgspatric216
66792Helicobacter sanguini MIT 97-61941548018.3wgspatric1548018
66792Helicobacter sp. MIT 01-6451425400.3wgspatric425400
66792Helicobacter sp. MIT 03-16141548147.3wgspatric1548147
66792Helicobacter sp. MIT 03-16161548148.3wgspatric1548148
66792Helicobacter sp. MIT 05-52931548149.3wgspatric1548149
66792Helicobacter sp. MIT 05-52941548150.3wgspatric1548150
66792Helicobacter sp. MIT 09-69491548152.3wgspatric1677920
66792Helicobacter sp. MIT 11-55691548151.3wgspatric1548151
66792Helicobacter trogontum ATCC 4931050960.4wgspatric50960
66792Helicobacter typhlonius MIT 98-681076936.7wgspatric76936
66792Helicobacter bilis ATCC 516302563366541draftimg1408441
66792Helicobacter bilis ATCC 516302917782786draftimg1408441
66792Helicobacter bilis ATCC 516302700989481draftimg1408441
66792Helicobacter bilis ATCC 51630GCA_002895905scaffoldncbi37372

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes87.264no
flagellatedyes51.708no
gram-positiveno99.152no
anaerobicno78.104no
halophileno86.546no
spore-formingno95.839no
glucose-utilno85.923no
aerobicno97.105no
thermophileno87.452yes
glucose-fermentno83.557no

External links

@ref: 34711

culture collection no.: CIP 104752, ATCC 51630, MIT Hb1

straininfo link

  • @ref: 92888
  • straininfo: 11952

literature

  • topic: Phylogeny
  • Pubmed-ID: 15774681
  • title: Extension of the species Helicobacter bilis to include the reference strains of Helicobacter sp. flexispira taxa 2, 3 and 8 and Finnish canine and feline flexispira strains.
  • authors: Hanninen ML, Karenlampi RI, Koort JMK, Mikkonen T, Bjorkroth KJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63245-0
  • year: 2005
  • mesh: Animals, Cat Diseases/*microbiology, Cats, Chaperonin 60/genetics, Cricetinae, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Dog Diseases/*microbiology, Dogs, Helicobacter/*classification/*genetics/isolation & purification/ultrastructure, Helicobacter Infections/microbiology/*veterinary, Humans, Mice, Microscopy, Electron, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Rats, Sequence Analysis, DNA, Urease/genetics
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34711Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104752Collection of Institut Pasteur (CIP 104752)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
92888Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID11952.1