Strain identifier

BacDive ID: 135351

Type strain: No

Species: Mycobacterium avium subsp. paratuberculosis

Strain history: CIP <- 1994, ATCC <- R.J. Chiodini: strain Holland-1, Mycobacterium paratuberculosis <- J. Haagsma

NCBI tax ID(s): 1770 (subspecies)

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General

@ref: 34447

BacDive-ID: 135351

keywords: Bacteria, mesophilic, rod-shaped

description: Mycobacterium avium subsp. paratuberculosis CIP 103968 is a mesophilic, rod-shaped bacterium of the family Mycobacteriaceae.

NCBI tax id

  • NCBI tax id: 1770
  • Matching level: subspecies

strain history

  • @ref: 34447
  • history: CIP <- 1994, ATCC <- R.J. Chiodini: strain Holland-1, Mycobacterium paratuberculosis <- J. Haagsma

doi: 10.13145/bacdive135351.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium avium subsp. paratuberculosis
  • full scientific name: Mycobacterium avium subsp. paratuberculosis (Bergey et al. 1923) Thorel et al. 1990

  • synonyms

    • @ref: 20215
    • synonym: Mycobacterium paratuberculosis

@ref: 34447

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium avium subsp. paratuberculosis

type strain: no

Morphology

cell morphology

  • @ref: 34447
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34447MEDIUM 96 - for Mycobacterium avium subsp. paratuberculosisyesTween 80 (0.500 ml);Middlebrook 7H9 broth (4.700 g);Middelbrook OADC enrichment (100.000 ml);Distilled water (900.000 ml);Mycobactine (2.000 ml)
34447CIP Medium 96yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=96

culture temp

@refgrowthtypetemperaturerange
34447positivegrowth37mesophilic
34447positivegrowth30-37mesophilic
34447nogrowth10psychrophilic
34447nogrowth22psychrophilic
34447nogrowth45thermophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
34447606565hippurate-hydrolysis
3444717632nitrate-reduction
3444716301nitrite-reduction

metabolite production

  • @ref: 34447
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
34447oxidase-
34447beta-galactosidase-3.2.1.23
34447gelatinase-
34447catalase+1.11.1.6
34447gamma-glutamyltransferase+2.3.2.2
34447urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
34447--++-+-----+--------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typeisolation date
34447NetherlandsNLDEurope
34447NetherlandsNLDEuropeHuman, With Crohn's disease, intestine1987

Safety information

risk assessment

  • @ref: 34447
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 34447

culture collection no.: CIP 103968, ATCC 49164

straininfo link

  • @ref: 92725
  • straininfo: 42332

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34447Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103968Collection of Institut Pasteur (CIP 103968)
68382Automatically annotated from API zym
92725Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID42332.1