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Strain identifier

BacDive ID: 135327

Type strain: No

Species: Gardnerella vaginalis

Strain history: 1993, J. Wanderscheid, Baxter Diagnostics Inc., Paris Nord II, France: strain AmMS 117

NCBI tax ID(s): 2702 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 34416

BacDive-ID: 135327

keywords: genome sequence, Bacteria, mesophilic

description: Gardnerella vaginalis CIP 103660 is a mesophilic bacterium of the family Bifidobacteriaceae.

NCBI tax id

  • NCBI tax id: 2702
  • Matching level: species

strain history: 1993, J. Wanderscheid, Baxter Diagnostics Inc., Paris Nord II, France: strain AmMS 117

doi: 10.13145/bacdive135327.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Gardnerella
  • species: Gardnerella vaginalis
  • full scientific name: Gardnerella vaginalis (Gardner and Dukes 1955) Greenwood and Pickett 1980
  • synonyms

    • @ref: 20215
    • synonym: Haemophilus vaginalis

@ref: 34416

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Gardnerella

species: Gardnerella vaginalis

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 54.57

Culture and growth conditions

culture medium

  • @ref: 34416
  • name: MEDIUM 26 - for Gardnerella and Propionibacterium lymphophilum
  • growth: yes
  • composition: Distilled water make up to (1000.000 ml);Horse serum (200.000 ml);Brainheart infusion (37.000 g);Maltose 10 % solution - M0173 (200.000 ml)

culture temp

  • @ref: 34416
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 98.496

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.852

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 98.924

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Gardnerella vaginalis ATCC 49145GCA_003034925contigncbi2702
66792Gardnerella vaginalis ATCC 49145GCA_001913835contigncbi2702
66792Gardnerella vaginalis strain ATCC 491452702.107wgspatric2702
66792Gardnerella vaginalis strain ATCC 491452702.154wgspatric2702
66792Gardnerella vaginalis ATCC 491452854671940draftimg2702
66792Gardnerella vaginalis ATCC 491452854673377draftimg2702
66792Clostridioides difficile VRECD0081GCA_900164905scaffoldpatric1496
66792Bacillus subtilis NRS6145GCA_905315685contigpatric1423

External links

@ref: 34416

culture collection no.: CIP 103660, ATCC 49145

straininfo link

@refpassport
20218http://www.straininfo.net/strains/151234
20218http://www.straininfo.net/strains/113837

literature

topicPubmed-IDtitleauthorsjournalDOIyearmesh
Pathogenicity21175040Inhibitory activity of thymol on native and mature Gardnerella vaginalis biofilms: in vitro study.Braga PC, Dal Sasso M, Culici M, Spallino AArzneimittelforschung10.1055/s-0031-12963462010Anti-Infective Agents/*pharmacology, Biofilms/*drug effects, Female, Gardnerella vaginalis/*drug effects/growth & development, Humans, Microbial Sensitivity Tests, Microscopy, Fluorescence, Microscopy, Phase-Contrast, Thymol/*pharmacology, Vaginosis, Bacterial/microbiology
Genetics28473387Draft Genome Sequence of Gardnerella vaginalis Strain ATCC 49145 Associated with Bacterial Vaginosis.Kidane DT, Arivett BA, Crigler J, Vick EJ, Farone AL, Farone MBGenome Announc10.1128/genomeA.00286-172017

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
34416Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15482 Collection of Institut Pasteur (CIP 103660)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes