Strain identifier
BacDive ID: 135327
Type strain: 
Species: Gardnerella vaginalis
Strain history: 1993, J. Wanderscheid, Baxter Diagnostics Inc., Paris Nord II, France: strain AmMS 117
NCBI tax ID(s): 2702 (species)
version 7.1 (current version)
General
@ref: 34416
BacDive-ID: 135327
keywords: genome sequence, Bacteria, mesophilic
description: Gardnerella vaginalis CIP 103660 is a mesophilic bacterium of the family Bifidobacteriaceae.
NCBI tax id
- NCBI tax id: 2702
- Matching level: species
strain history: 1993, J. Wanderscheid, Baxter Diagnostics Inc., Paris Nord II, France: strain AmMS 117
doi: 10.13145/bacdive135327.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Gardnerella
- species: Gardnerella vaginalis
- full scientific name: Gardnerella vaginalis (Gardner and Dukes 1955) Greenwood and Pickett 1980
synonyms
- @ref: 20215
- synonym: Haemophilus vaginalis
@ref: 34416
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Gardnerella
species: Gardnerella vaginalis
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 54.57
Culture and growth conditions
culture medium
- @ref: 34416
- name: MEDIUM 26 - for Gardnerella and Propionibacterium lymphophilum
- growth: yes
- composition: Distilled water make up to (1000.000 ml);Horse serum (200.000 ml);Brainheart infusion (37.000 g);Maltose 10 % solution - M0173 (200.000 ml)
culture temp
- @ref: 34416
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 98.496
spore formation
- @ref: 69480
- spore formation: no
- confidence: 98.852
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 98.924
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Gardnerella vaginalis ATCC 49145 | GCA_003034925 | contig | ncbi | 2702 |
| 66792 | Gardnerella vaginalis ATCC 49145 | GCA_001913835 | contig | ncbi | 2702 |
| 66792 | Gardnerella vaginalis strain ATCC 49145 | 2702.107 | wgs | patric | 2702 |
| 66792 | Gardnerella vaginalis strain ATCC 49145 | 2702.154 | wgs | patric | 2702 |
| 66792 | Gardnerella vaginalis ATCC 49145 | 2854671940 | draft | img | 2702 |
| 66792 | Gardnerella vaginalis ATCC 49145 | 2854673377 | draft | img | 2702 |
| 66792 | Clostridioides difficile VRECD0081 | GCA_900164905 | scaffold | patric | 1496 |
| 66792 | Bacillus subtilis NRS6145 | GCA_905315685 | contig | patric | 1423 |
External links
@ref: 34416
culture collection no.: CIP 103660, ATCC 49145
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/151234 |
| 20218 | http://www.straininfo.net/strains/113837 |
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh |
|---|---|---|---|---|---|---|---|
| Pathogenicity | 21175040 | Inhibitory activity of thymol on native and mature Gardnerella vaginalis biofilms: in vitro study. | Braga PC, Dal Sasso M, Culici M, Spallino A | Arzneimittelforschung | 10.1055/s-0031-1296346 | 2010 | Anti-Infective Agents/*pharmacology, Biofilms/*drug effects, Female, Gardnerella vaginalis/*drug effects/growth & development, Humans, Microbial Sensitivity Tests, Microscopy, Fluorescence, Microscopy, Phase-Contrast, Thymol/*pharmacology, Vaginosis, Bacterial/microbiology |
| Genetics | 28473387 | Draft Genome Sequence of Gardnerella vaginalis Strain ATCC 49145 Associated with Bacterial Vaginosis. | Kidane DT, Arivett BA, Crigler J, Vick EJ, Farone AL, Farone MB | Genome Announc | 10.1128/genomeA.00286-17 | 2017 |
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 34416 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15482 | Collection of Institut Pasteur (CIP 103660) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |