Strain identifier

BacDive ID: 135090

Type strain: Yes

Species: Psychromonas profunda

Strain Designation: 2825

Strain history: CIP <- 2003, JCM <- 2001, Y. Xu: strain: 2825

NCBI tax ID(s): 174037 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 33893

BacDive-ID: 135090

keywords: 16S sequence, Bacteria, psychrophilic, Gram-negative, motile, rod-shaped

description: Psychromonas profunda 2825 is a psychrophilic, Gram-negative, motile bacterium of the family Psychromonadaceae.

NCBI tax id

  • NCBI tax id: 174037
  • Matching level: species

strain history

@refhistory
67770Y. Xu 2825.
33893CIP <- 2003, JCM <- 2001, Y. Xu: strain: 2825

doi: 10.13145/bacdive135090.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Psychromonadaceae
  • genus: Psychromonas
  • species: Psychromonas profunda
  • full scientific name: Psychromonas profunda Xu et al. 2003

@ref: 33893

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Psychromonadaceae

genus: Psychromonas

species: Psychromonas profunda

strain designation: 2825

type strain: yes

Morphology

cell morphology

  • @ref: 33893
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33893Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
33893CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
33893positivegrowth5psychrophilic
67770positivegrowth4psychrophilic
33893positivegrowth5-10psychrophilic
33893nogrowth15psychrophilic
33893nogrowth18psychrophilic
33893nogrowth25mesophilic
33893nogrowth30mesophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
33893NaClnogrowth0 %
33893NaClnogrowth2 %
33893NaClnogrowth4 %
33893NaClnogrowth6 %
33893NaClnogrowth8 %

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
338934853esculin-hydrolysis
3389317632nitrate-reduction
3389316301nitrite-reduction

metabolite production

  • @ref: 33893
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

enzymes

@refvalueactivityec
33893oxidase+
33893beta-galactosidase+3.2.1.23
33893alcohol dehydrogenase-1.1.1.1
33893gelatinase-
33893amylase+
33893DNase-
33893caseinase-3.4.21.50
33893catalase+1.11.1.6
33893lecithinase-
33893lipase-
33893lysine decarboxylase-4.1.1.18
33893ornithine decarboxylase-4.1.1.17
33893protease-
33893tryptophan deaminase-
33893urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33893-+---+----++--------

Isolation, sampling and environmental information

isolation

@refgeographic locationsample typecountry
33893West African coast
67770Atlantic OceanThe upper layer of deep Atlantic sediments at a depth of 2,770 m off the West African coast
33893Off the West African coastEnvironment, Atlantic sedimentsAtlantic Ocean

Safety information

risk assessment

  • @ref: 33893
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Psychromonas profunda 16S rRNA gene
  • accession: AJ416756
  • length: 1496
  • database: ena
  • NCBI tax ID: 174037

GC content

  • @ref: 67770
  • GC-content: 38.1
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 33893

culture collection no.: CIP 108122, JCM 11437, LMG 21260, CGMCC 1.5342

straininfo link

  • @ref: 92511
  • straininfo: 85318

literature

  • topic: Phylogeny
  • Pubmed-ID: 12710622
  • title: Psychromonas profunda sp. nov., a psychropiezophilic bacterium from deep Atlantic sediments.
  • authors: Xu Y, Nogi Y, Kato C, Liang Z, Ruger HJ, De Kegel D, Glansdorff N
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02227-0
  • year: 2003
  • mesh: Alteromonadaceae/*classification/genetics/isolation & purification/physiology, Atlantic Ocean, Cold Temperature, DNA, Bacterial/analysis/genetics, Geologic Sediments/*microbiology, Hydrostatic Pressure, Microscopy, Electron, Molecular Sequence Data, Phenotype, Phylogeny, Temperature
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33893Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108122Collection of Institut Pasteur (CIP 108122)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
92511Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID85318.1