Psychromonas profunda (CIP 108122, JCM 11437, LMG 21260)

Name: Psychromonas profunda (CIP 108122, JCM 11437, LMG 21260)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 135090

Type strain

Strain Designation 2825

Culture col. no. CIP 108122 JCM 11437 LMG 21260 CGMCC 1.5342 2825

NCBI tax ID(s) 174037

Special Collections JCM CIP

Links

Psychromonas profunda 2825 is a psychrophilic, Gram-negative, motile prokaryote of the family Psychromonadaceae.

Gram-negative motile rod-shaped psychrophilic 16S sequence

Name and taxonomic classification

SI-ID 85318

LMG 21260,JCM 11437,CIP 108122

@ref 20215

Last LPSN update 2025-12-16 10:02:13

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Psychromonadaceae

Genus Psychromonas

Species Psychromonas profunda

Full scientific name Psychromonas profunda Xu et al. 2003

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
33893	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
33893	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
33893	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
33893	positive	growth	5	psychrophilic
33893	positive	growth	5-10	psychrophilic
33893	negative	growth	15
33893	negative	growth	18
33893	negative	growth	25
33893	negative	growth	30
67770	positive	growth	4	psychrophilic

Physiology and metabolism

Halophily

@ref	Salt	Tested relation	Concentration
33893	NaCl	growth	0 %
33893	NaCl	growth	2 %
33893	NaCl	growth	4 %
33893	NaCl	growth	6 %
33893	NaCl	growth	8 %

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
33893	4853 ChEBI	esculin	-	hydrolysis
33893	17632 ChEBI	nitrate	-	reduction
33893	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
33893	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
33893	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
33893	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
33893	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
33893	caseinase	-	3.4.21.50
33893	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
33893	DNase	-
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
33893	gelatinase	-
33893	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
33893	lipase	-
68382	lipase (C 14)	-		from API zym
33893	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
33893	ornithine decarboxylase	-	4.1.1.17
33893	oxidase	+
33893	protease	-
68382	trypsin	-	3.4.21.4	from API zym
33893	tryptophan deaminase	-
33893	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
33893	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country
33893		West African coast
67770	The upper layer of deep Atlantic sediments at a depth of 2,770 m off the West African coast	Atlantic Ocean
33893	Environment, Atlantic sediments	Off the West African coast	Atlantic Ocean

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
33893	1	Risk group (French classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Psychromonas profunda 16S rRNA gene	AJ416756	1496		174037

GC content

@ref	GC-content (mol%)	Method
67770	38.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychromonas profunda sp. nov., a psychropiezophilic bacterium from deep Atlantic sediments.	Xu Y, Nogi Y, Kato C, Liang Z, Ruger HJ, De Kegel D, Glansdorff N	Int J Syst Evol Microbiol	10.1099/ijs.0.02227-0	2003

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33893	Collection of Institut Pasteur ; Curators of the CIP; CIP 108122
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Psychromonas profunda (CIP 108122, JCM 11437, LMG 21260)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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