Strain identifier
BacDive ID: 134348
Type strain: 
Species: Croceitalea eckloniae
Strain history: K. K. Kwon DOKDO 025.
NCBI tax ID(s): 346189 (species)
version 8.1 (current version)
General
@ref: 32564
BacDive-ID: 134348
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Croceitalea eckloniae KCCM 42309 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from rhizosphere of brown alga.
NCBI tax id
- NCBI tax id: 346189
- Matching level: species
strain history
- @ref: 67770
- history: K. K. Kwon DOKDO 025.
doi: 10.13145/bacdive134348.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Croceitalea
- species: Croceitalea eckloniae
- full scientific name: Croceitalea eckloniae Lee et al. 2008
@ref: 32564
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Croceitalea
species: Croceitalea eckloniae
type strain: yes
Morphology
cell morphology
- @ref: 32564
- gram stain: negative
- cell length: 1-2.8 µm
- cell width: 0.3-0.5 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 32564
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 32564 | positive | growth | 10-34 | |
| 32564 | positive | optimum | 29 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32564 | positive | growth | 6.5-10 | alkaliphile |
| 32564 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 32564
- oxygen tolerance: aerobe
spore formation
- @ref: 32564
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32564 | NaCl | positive | growth | 0.4-5.4 % |
| 32564 | NaCl | positive | optimum | 1.6 % |
observation
| @ref | observation |
|---|---|
| 32564 | aggregates in chains |
| 67770 | quinones: MK-6 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32564 | 17057 | cellobiose | + | carbon source |
| 32564 | 28757 | fructose | + | carbon source |
| 32564 | 28260 | galactose | + | carbon source |
| 32564 | 17234 | glucose | + | carbon source |
| 32564 | 28087 | glycogen | + | carbon source |
| 32564 | 17306 | maltose | + | carbon source |
| 32564 | 37684 | mannose | + | carbon source |
| 32564 | 28053 | melibiose | + | carbon source |
| 32564 | 506227 | N-acetylglucosamine | + | carbon source |
| 32564 | 33942 | ribose | + | carbon source |
| 32564 | 17992 | sucrose | + | carbon source |
| 32564 | 27082 | trehalose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 32564 | catalase | + | 1.11.1.6 |
| 32564 | gelatinase | + |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species |
|---|---|---|
| 32564 | rhizosphere of brown alga | |
| 67770 | Rhizosphere of the marine alga Ecklonia kurome | Ecklonia kurome |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Algae | #Brown Algae |
| #Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_178237.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15779;96_416;97_54426;98_71991;99_178237&stattab=map
- Last taxonomy: Croceitalea eckloniae subclade
- 16S sequence: DQ191183
- Sequence Identity:
- Total samples: 14
- aquatic counts: 14
Sequence information
16S sequences
- @ref: 32564
- description: Croceitalea eckloniae strain DOKDO 025 16S ribosomal RNA gene, partial sequence
- accession: DQ191183
- length: 1500
- database: nuccore
- NCBI tax ID: 346189
GC content
| @ref | GC-content | method |
|---|---|---|
| 32564 | 59.5 | |
| 67770 | 59.5 | high performance liquid chromatography (HPLC) |
External links
@ref: 32564
culture collection no.: KCCM 42309, JCM 13827, DOKDO 025
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 18984684 | Description of Croceitalea gen. nov. in the family Flavobacteriaceae with two species, Croceitalea eckloniae sp. nov. and Croceitalea dokdonensis sp. nov., isolated from the rhizosphere of the marine alga Ecklonia kurome. | Lee HS, Kwon KK, Yang SH, Bae SS, Park CH, Kim SJ, Lee JH | Int J Syst Evol Microbiol | 10.1099/ijs.0.65697-0 | 2008 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Korea, Molecular Sequence Data, Phaeophyta/*microbiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Species Specificity | Genetics |
| Phylogeny | 23002047 | Aureicoccus marinus gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from seawater. | Park S, Yoshizawa S, Muramatsu Y, Nakagawa Y, Yokota A, Kogure K | Int J Syst Evol Microbiol | 10.1099/ijs.0.045104-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Heterotrophic Processes, Japan, Molecular Sequence Data, Pacific Ocean, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, Water Microbiology | Genetics |
| Phylogeny | 26373987 | Croceitalea litorea sp. nov., isolated from seashore sand. | Kim M, Cha IT, Lee HW, Yim KJ, Song HS, Hyun DW, Bae JW, Roh SW, Lee SJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000613 | 2015 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Silicon Dioxide, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 32564 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28780 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |