Name: Croceitalea eckloniae KCCM 42309
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134348

Type strain:

Species: Croceitalea eckloniae

Culture col. no.: KCCM 42309, JCM 13827, DOKDO 025

Strain history: K. K. Kwon DOKDO 025.

NCBI tax ID(s): 346189 (species)

Section

Croceitalea eckloniae KCCM 42309 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from rhizosphere of brown alga.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Croceitalea*
	Species	**Croceitalea eckloniae**
	Full Scientific Name (LPSN)	Croceitalea eckloniae Lee et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32564]	Gram stain	negative

[Ref.: #32564]	Cell length	1-2.8 µm

[Ref.: #32564]	Cell width	0.3-0.5 µm

[Ref.: #32564]	Cell shape	rod-shaped

[Ref.: #32564]	Motility	no

[Ref.: #32564]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32564]	growth	10-34 °C
[Ref.: #32564]	optimum	29 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #32564]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32564]			optimum	8
[Ref.: #32564]			growth	6.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32564]

Oxygen tolerance

aerobe

[Ref.: #32564]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32564]		NaCl		growth	0.4-5.4	%
[Ref.: #32564]		NaCl		optimum	1.6	%

[Ref.: #32564]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32564]	cellobiose ChEBI	+	carbon source
[Ref.: #32564]	fructose ChEBI	+	carbon source
[Ref.: #32564]	galactose ChEBI	+	carbon source
[Ref.: #32564]	glucose ChEBI	+	carbon source
[Ref.: #32564]	glycogen ChEBI	+	carbon source
[Ref.: #32564]	maltose ChEBI	+	carbon source
[Ref.: #32564]	mannose ChEBI	+	carbon source
[Ref.: #32564]	melibiose ChEBI	+	carbon source
[Ref.: #32564]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32564]	ribose ChEBI	+	carbon source
[Ref.: #32564]	sucrose ChEBI	+	carbon source
[Ref.: #32564]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32564]		catalase	+	1.11.1.6
[Ref.: #32564]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32564]	Sample type/isolated from	rhizosphere of brown alga

[Ref.: #67770]	Sample type/isolated from	Rhizosphere of the marine alga Ecklonia kurome
[Ref.: #67770]	Host species	Ecklonia kurome
* marker position based on {}

Isolation sources categories

#Host	#Algae	#Brown Algae
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ191183 (>99% sequence identity) for Croceitalea eckloniae subclade from Microbeatlas

Aquatic Samples	14
Soil Samples
Animal Samples
Plant Samples
Total Samples	14

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32564]	Croceitalea eckloniae strain DOKDO 025 16S ribosomal RNA gene, partial sequence	DQ191183	1500	GenBank	346189 tax ID

[Ref.: #32564]	GC-content	59.5 mol%
[Ref.: #67770]	GC-content	59.5 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #32564]

Culture collection no.

KCCM 42309, JCM 13827, DOKDO 025

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Croceitalea litorea sp. nov., isolated from seashore sand.	Kim M, Cha IT, Lee HW, Yim KJ, Song HS, Hyun DW, Bae JW, Roh SW, Lee SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000613	2015	*
Phylogeny	Aureicoccus marinus gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from seawater.	Park S, Yoshizawa S, Muramatsu Y, Nakagawa Y, Yokota A, Kogure K	Int J Syst Evol Microbiol	10.1099/ijs.0.045104-0	2012	*
Phylogeny	Description of Croceitalea gen. nov. in the family Flavobacteriaceae with two species, Croceitalea eckloniae sp. nov. and Croceitalea dokdonensis sp. nov., isolated from the rhizosphere of the marine alga Ecklonia kurome.	Lee HS, Kwon KK, Yang SH, Bae SS, Park CH, Kim SJ, Lee JH	Int J Syst Evol Microbiol	10.1099/ijs.0.65697-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32564

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28780 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#28780

IJSEM 2505 2008 ( DOI 10.1099/ijs.0.65697-0 , PubMed 18984684 )

* These data were automatically processed and therefore are not curated

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