Croceitalea eckloniae (KCCM 42309, JCM 13827, DOKDO 025)

Name: Croceitalea eckloniae (KCCM 42309, JCM 13827, DOKDO 025)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134348

Type strain

Culture col. no. KCCM 42309 JCM 13827 DOKDO 025

NCBI tax ID(s) 346189

Special Collections JCM Literature strains

Links

Croceitalea eckloniae KCCM 42309 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from rhizosphere of brown alga.

Gram-negative rod-shaped aerobe 16S sequence

Name and taxonomic classification

SI-ID 393389

JCM 13827

@ref 20215

Last LPSN update 2025-12-16 10:02:02

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Croceitalea

Species Croceitalea eckloniae

Full scientific name Croceitalea eckloniae Lee et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32564	negative	1-2.8 µm	0.3-0.5 µm	rod-shaped

Pigmentation

32564

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32564	positive	growth	10-34
32564	positive	optimum	29
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH
32564	positive	optimum	8
32564	positive	growth	6.5-10

Physiology and metabolism

Oxygen tolerance

32564

Oxygen toleranceaerobe

Spore formation

32564

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32564	NaCl	positive	growth	0.4-5.4 %
32564	NaCl	positive	optimum	1.6 %

Observation

@ref	Observation
32564	aggregates in chains
67770	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32564	17057 ChEBI	cellobiose	+	carbon source
32564	28757 ChEBI	fructose	+	carbon source
32564	28260 ChEBI	galactose	+	carbon source
32564	17234 ChEBI	glucose	+	carbon source
32564	28087 ChEBI	glycogen	+	carbon source
32564	17306 ChEBI	maltose	+	carbon source
32564	37684 ChEBI	mannose	+	carbon source
32564	28053 ChEBI	melibiose	+	carbon source
32564	506227 ChEBI	N-acetylglucosamine	+	carbon source
32564	33942 ChEBI	ribose	+	carbon source
32564	17992 ChEBI	sucrose	+	carbon source
32564	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32564	catalase	+	1.11.1.6
32564	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Algae	#Brown Algae
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type
32564	rhizosphere of brown alga
67770	Rhizosphere of the marine alga Ecklonia kurome

Taxonmaps

69479

Global distribution of 16S sequence DQ191183 (>99% sequence identity) for Croceitalea eckloniae subclade from Microbeatlas

Aquatic Samples	14
Soil Samples
Animal Samples
Plant Samples
Total Samples	14

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32564	Croceitalea eckloniae strain DOKDO 025 16S ribosomal RNA gene, partial sequence	DQ191183	1500		346189

GC content

@ref	GC-content (mol%)
32564	59.5
67770	59.5

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Elevated Temperature-Induced Epimicrobiome Shifts in an Invasive Seaweed Gracilaria vermiculophylla.	Dusedau L, Ren Y, Hou M, Wahl M, Hu ZM, Wang G, Weinberger F.	Microorganisms	10.3390/microorganisms11030599	2023
	Chemically Mediated Microbial "Gardening" Capacity of a Seaweed Holobiont Is Dynamic.	Saha M, Dove S, Weinberger F.	Microorganisms	10.3390/microorganisms8121893	2020
Phylogeny	Croceitalea litorea sp. nov., isolated from seashore sand.	Kim M, Cha IT, Lee HW, Yim KJ, Song HS, Hyun DW, Bae JW, Roh SW, Lee SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000613	2015
Phylogeny	Aureicoccus marinus gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from seawater.	Park S, Yoshizawa S, Muramatsu Y, Nakagawa Y, Yokota A, Kogure K	Int J Syst Evol Microbiol	10.1099/ijs.0.045104-0	2012
Phylogeny	Description of Croceitalea gen. nov. in the family Flavobacteriaceae with two species, Croceitalea eckloniae sp. nov. and Croceitalea dokdonensis sp. nov., isolated from the rhizosphere of the marine alga Ecklonia kurome.	Lee HS, Kwon KK, Yang SH, Bae SS, Park CH, Kim SJ, Lee JH	Int J Syst Evol Microbiol	10.1099/ijs.0.65697-0	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#32564	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28780 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Croceitalea eckloniae (KCCM 42309, JCM 13827, DOKDO 025)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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