Strain identifier

BacDive ID: 134335

Type strain: No

Species: Halobacterium salinarum

Strain Designation: HPC1-2

Culture col. no.: BCC 24372, JCM 14661, PCU 302

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General

@ref: 32504

BacDive-ID: 134335

keywords: facultative anaerobe, Archaea, 16S sequence, gram-negative, motile, rod-shaped

description: Halobacterium salinarum HPC1-2 is a facultative anaerobe, gram-negative, motile archaeon that was isolated from salt fermented fish.

doi: 10.13145/bacdive134335.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/euryarchaeota
  • domain: Archaea
  • phylum: Euryarchaeota
  • class: Halobacteria
  • order: Halobacteriales
  • family: Halobacteriaceae
  • genus: Halobacterium
  • species: Halobacterium salinarum
  • full scientific name: Halobacterium salinarum corrig. (Harrison and Kennedy 1922) Elazari-Volcani 1957 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Pseudomonas salinaria
    20215Bacterium halobium
    20215Halobacterium cutirubrum
    20215Halobacterium halobium
    20215Halobacterium salinarium
    20215Serratia cutirubrum
    20215Halobacterium piscisalsi

@ref: 32504

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Halobacteriaceae

genus: Halobacterium

species: Halobacterium salinarum

strain designation: HPC1-2

type strain: no

Morphology

cell morphology

  • @ref: 32504
  • gram stain: negative
  • cell length: 01-02 µm
  • cell width: 0.5-1 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 32504
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperature
32504positivegrowth20-60
32504positiveoptimum37-40

culture pH

@refabilitytypepH
32504positivegrowth05-08
32504positiveoptimum7-7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 32504
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 32504
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
32504NaClpositivegrowth15.08-24.94 %
32504NaClpositiveoptimum19.72-24.94 %

observation

  • @ref: 32504
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3250416947citrate+carbon source
3250417754glycerol+carbon source
3250417716lactose+carbon source

enzymes

@refvalueactivityec
32504catalase+1.11.1.6
32504cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 32504
  • sample type: salt fermented fish

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Seafood
#Host#Fishes
#Condition#Saline
#Engineered#Food production#Fermented

Sequence information

16S sequences

  • @ref: 32504
  • description: Halobacterium sp. HPC1-2 gene for 16S ribosomal RNA, partial sequence
  • accession: AB285020
  • length: 1375
  • database: nuccore
  • NCBI tax ID: 2242

GC content

  • @ref: 32504
  • GC-content: 65.5

External links

@ref: 32504

culture collection no.: BCC 24372, JCM 14661, PCU 302

straininfo link

@refpassport
20218http://www.straininfo.net/strains/833604
20218http://www.straininfo.net/strains/833605
20218http://www.straininfo.net/strains/833606

Reference

@idauthorstitledoi/urljournalpubmedID_cross_reference
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2872410.1099/ijs.0.65592-0
32504Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-1728724