Strain identifier
BacDive ID: 134254
Type strain: 
Species: Marinobacter segnicrescens
Strain Designation: SS011B1-4T
NCBI tax ID(s): 430453 (species)
version 8.1 (current version)
General
@ref: 32141
BacDive-ID: 134254
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative, motile, ovoid-shaped
description: Marinobacter segnicrescens SS011B1-4T is a Gram-negative, motile, ovoid-shaped bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 430453
- Matching level: species
doi: 10.13145/bacdive134254.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marinobacter
- species: Marinobacter segnicrescens
- full scientific name: Marinobacter segnicrescens Guo et al. 2007
@ref: 32141
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacter
species: Marinobacter segnicrescens
strain designation: SS011B1-4T
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 32141 | negative | 1.05 µm | 0.65 µm | ovoid-shaped | yes | |
| 69480 | yes | 95.899 | ||||
| 69480 | negative | 99.999 |
pigmentation
- @ref: 32141
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 32141 | positive | growth | 15-45 | |
| 32141 | positive | optimum | 30-37 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32141 | positive | growth | 06-10 | alkaliphile |
| 32141 | positive | optimum | 7.5-8 |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 32141 | no | |
| 69481 | no | 100 |
| 69480 | no | 99.996 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32141 | NaCl | positive | growth | 01-15 % |
| 32141 | NaCl | positive | optimum | 04-08 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32141 | 30089 | acetate | + | carbon source |
| 32141 | 16947 | citrate | + | carbon source |
| 32141 | 28757 | fructose | + | carbon source |
| 32141 | 24265 | gluconate | + | carbon source |
| 32141 | 17234 | glucose | + | carbon source |
| 32141 | 25115 | malate | + | carbon source |
| 32141 | 17268 | myo-inositol | + | carbon source |
| 32141 | 17272 | propionate | + | carbon source |
| 32141 | 33942 | ribose | + | carbon source |
| 32141 | 30911 | sorbitol | + | carbon source |
| 32141 | 30031 | succinate | + | carbon source |
| 32141 | 17992 | sucrose | + | carbon source |
| 32141 | 27082 | trehalose | + | carbon source |
| 32141 | 17632 | nitrate | + | reduction |
metabolite production
| @ref | Chebi-ID | metabolite | production |
|---|---|---|---|
| 32141 | 16136 | hydrogen sulfide | yes |
| 32141 | 35581 | indole | yes |
metabolite tests
- @ref: 32141
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 32141 | catalase | + | 1.11.1.6 |
| 32141 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 32141
- sample type: marine sediment
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_71204.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_1317;97_5482;98_14085;99_71204&stattab=map
- Last taxonomy: Marinobacter
- 16S sequence: EF157832
- Sequence Identity:
- Total samples: 68
- soil counts: 3
- aquatic counts: 63
- animal counts: 1
- plant counts: 1
Sequence information
16S sequences
- @ref: 32141
- description: Marinobacter segnicrescens strain SS011B1-4 16S ribosomal RNA gene, partial sequence
- accession: EF157832
- length: 1387
- database: nuccore
- NCBI tax ID: 430453
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marinobacter segnicrescens CGMCC 1.6489 | GCA_900111555 | scaffold | ncbi | 430453 |
| 66792 | Marinobacter segnicrescens strain CGMCC 1.6489 | 430453.7 | wgs | patric | 430453 |
| 66792 | Marinobacter segnicrescens CGMCC 1.6489 | 2617270929 | draft | img | 430453 |
GC content
- @ref: 32141
- GC-content: 62.2
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 89.496 | yes |
| flagellated | yes | 85.781 | no |
| gram-positive | no | 98.514 | yes |
| anaerobic | no | 98.05 | no |
| aerobic | yes | 88.397 | no |
| halophile | yes | 84.438 | no |
| spore-forming | no | 96.387 | no |
| glucose-ferment | no | 87.238 | no |
| thermophile | no | 98.51 | no |
| glucose-util | no | 52.718 | yes |
External links
@ref: 32141
culture collection no.: LMG 23928, CGMCC 1.6489
straininfo link
- @ref: 91844
- straininfo: 293209
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 17766857 | Marinobacter segnicrescens sp. nov., a moderate halophile isolated from benthic sediment of the South China Sea. | Guo B, Gu J, Ye YG, Tang YQ, Kida K, Wu XL | Int J Syst Evol Microbiol | 10.1099/ijs.0.65030-0 | 2007 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Locomotion/physiology, Marinobacter/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Organic Chemicals/metabolism, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Saline Solution, Hypertonic/metabolism, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Spores, Bacterial/cytology, Temperature | Genetics |
| Phylogeny | 19542119 | Marinobacter lacisalsi sp. nov., a moderately halophilic bacterium isolated from the saline-wetland wildfowl reserve Fuente de Piedra in southern Spain. | Aguilera M, Jimenez-Pranteda ML, Kharroub K, Gonzalez-Paredes A, Durban JJ, Russell NJ, Ramos-Cormenzana A, Monteoliva-Sanchez M | Int J Syst Evol Microbiol | 10.1099/ijs.0.007518-0 | 2009 | Bacterial Typing Techniques, Base Composition, *Conservation of Natural Resources, DNA, Bacterial/analysis, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Genotype, Marinobacter/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride, Spain, Species Specificity, *Wetlands | Genetics |
| Phylogeny | 21296923 | Marinobacter daqiaonensis sp. nov., a moderate halophile isolated from a Yellow Sea salt pond. | Qu L, Zhu F, Zhang J, Gao C, Sun X | Int J Syst Evol Microbiol | 10.1099/ijs.0.028993-0 | 2011 | Base Composition, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Geologic Sediments/*microbiology, Marinobacter/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/*metabolism | Metabolism |
| Phylogeny | 23117603 | Marinobacter nanhaiticus sp. nov., polycyclic aromatic hydrocarbon-degrading bacterium isolated from the sediment of the South China Sea. | Gao W, Cui Z, Li Q, Xu G, Jia X, Zheng L | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9830-z | 2012 | Bacterial Typing Techniques, Base Composition, Benzoquinones/analysis, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Environmental Pollutants/metabolism, Fatty Acids/analysis, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Marinobacter/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Phylogeny, Polycyclic Aromatic Hydrocarbons/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature | Metabolism |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 32141 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28385 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | ||
| 91844 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID293209.1 |