Strain identifier
BacDive ID: 134235
Type strain: 
Species: Perexilibacter aurantiacus
Strain Designation: Shu-F-UV2-2
Strain history: IAM 15413 <-- J. Yoon et al. Shu-F-UV2-2.
NCBI tax ID(s): 406515 (species)
version 8.1 (current version)
General
@ref: 32036
BacDive-ID: 134235
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Perexilibacter aurantiacus Shu-F-UV2-2 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 406515
- Matching level: species
strain history
- @ref: 67770
- history: IAM 15413 <-- J. Yoon et al. Shu-F-UV2-2.
doi: 10.13145/bacdive134235.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Flammeovirgaceae
- genus: Perexilibacter
- species: Perexilibacter aurantiacus
- full scientific name: Perexilibacter aurantiacus Yoon et al. 2007
@ref: 32036
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Flammeovirgaceae
genus: Perexilibacter
species: Perexilibacter aurantiacus
strain designation: Shu-F-UV2-2
type strain: yes
Morphology
cell morphology
- @ref: 32036
- gram stain: negative
- cell length: 15 µm
- cell width: 0.4 µm
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: gliding
pigmentation
- @ref: 32036
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 32036 | positive | optimum | 33.5 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32036 | positive | growth | 05-10 | alkaliphile |
| 32036 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 32036
- oxygen tolerance: aerobe
spore formation
- @ref: 32036
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32036 | NaCl | positive | growth | 0-3.5 % |
| 32036 | NaCl | positive | optimum | 1.75 % |
observation
- @ref: 67770
- observation: quinones: MK-7
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32036 | 58143 | 5-dehydro-D-gluconate | + | carbon source |
| 32036 | 5291 | gelatin | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 32036 | acid phosphatase | + | 3.1.3.2 |
| 32036 | alkaline phosphatase | + | 3.1.3.1 |
| 32036 | catalase | + | 1.11.1.6 |
| 32036 | gelatinase | + | |
| 32036 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 32036 | marine sediment | |||
| 67770 | Sediment from Carp Island | Palau | PLW | Australia and Oceania |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_67182.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6573;96_29011;97_36581;98_47350;99_67182&stattab=map
- Last taxonomy: Perexilibacter aurantiacus subclade
- 16S sequence: AB276355
- Sequence Identity:
- Total samples: 38
- soil counts: 2
- aquatic counts: 28
- animal counts: 8
Sequence information
16S sequences
- @ref: 32036
- description: Perexilibacter aurantiacus gene for 16S rRNA, partial sequence
- accession: AB276355
- length: 1477
- database: nuccore
- NCBI tax ID: 406515
GC content
| @ref | GC-content | method |
|---|---|---|
| 32036 | 43 | |
| 67770 | 43 | high performance liquid chromatography (HPLC) |
External links
@ref: 32036
culture collection no.: MBIC 06993, IAM 15413, KCTC 12867, JCM 23194, NBRC 104244
straininfo link
- @ref: 91829
- straininfo: 308622
literature
- topic: Phylogeny
- Pubmed-ID: 17473242
- title: Perexilibacter aurantiacus gen. nov., sp. nov., a novel member of the family 'Flammeovirgaceae' isolated from sediment.
- authors: Yoon J, Ishikawa S, Kasai H, Yokota A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64845-0
- year: 2007
- mesh: Bacterial Typing Techniques, Bacteroidetes/chemistry/*classification/*isolation & purification/physiology, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA/genetics, Geologic Sediments/*microbiology, Microscopy, Electron, Transmission, Molecular Sequence Data, Palau, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Vitamin K 2/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 32036 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28286 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 91829 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID308622.1 |