Perexilibacter aurantiacus (MBIC 06993, IAM 15413, KCTC 12867)

Name: Perexilibacter aurantiacus (MBIC 06993, IAM 15413, KCTC 12867)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134235

Type strain

Strain Designation Shu-F-UV2-2

Culture col. no. MBIC 06993 IAM 15413 KCTC 12867 Shu-F-UV2-2 NBRC 104244 1 more

NCBI tax ID(s) 406515

Special Collections JCM KCTC Literature strains

History JCM <-- IAM 15413 <-- J. Yoon et al. Shu-F-UV2-2.

Links

Perexilibacter aurantiacus Shu-F-UV2-2 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

Gram-negative motile rod-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 308622

IAM 15413,KCTC 12867,JCM 23194

@ref 20215

Last LPSN update 2026-05-29 08:38:17

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Flammeovirgaceae

Genus Perexilibacter

Species Perexilibacter aurantiacus

Full scientific name Perexilibacter aurantiacus Yoon et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
32036	negative	15 µm	0.4 µm	rod-shaped		gliding

Pigmentation

32036

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32036	positive	optimum	33.5
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
32036	positive	optimum	7
32036	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

32036

Oxygen toleranceaerobe

Spore formation

32036

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32036	NaCl	positive	growth	0-3.5 %
32036	NaCl	positive	optimum	1.75 %

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32036	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
32036	5291 ChEBI	gelatin	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32036	acid phosphatase	+	3.1.3.2
32036	alkaline phosphatase	+	3.1.3.1
32036	catalase	+	1.11.1.6
32036	cytochrome oxidase	+	1.9.3.1
32036	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
32036	marine sediment
67770	Sediment from Carp Island	Palau	PLW	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence AB276355 (>99% sequence identity) for Perexilibacter aurantiacus subclade from Microbeatlas

Aquatic Samples	28
Soil Samples	2
Animal Samples	8
Plant Samples	0
Total Samples	38

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32036	Perexilibacter aurantiacus gene for 16S rRNA, partial sequence	AB276355	1477		406515
124043	Perexilibacter aurantiacus gene for 16S rRNA, partial sequence, strain: NBRC 104244.	AB682164	1449		406515

GC content

@ref	GC-content (mol%)	Method
32036	43
67770	43	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Perexilibacter aurantiacus gen. nov., sp. nov., a novel member of the family 'Flammeovirgaceae' isolated from sediment.	Yoon J, Ishikawa S, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.64845-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28286	IJSEM 964 2007 ( DOI 10.1099/ijs.0.64845-0 , PubMed 17473242 )
#32036	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28286
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Perexilibacter aurantiacus (MBIC 06993, IAM 15413, KCTC 12867)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media