Name: Perexilibacter aurantiacus Shu-F-UV2-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134235

Type strain:

Species: Perexilibacter aurantiacus

Strain Designation: Shu-F-UV2-2

Culture col. no.: MBIC 06993, IAM 15413, KCTC 12867, JCM 23194, NBRC 104244

Strain history: IAM 15413 <-- J. Yoon et al. Shu-F-UV2-2.

NCBI tax ID(s): 406515 (species)

SI-ID 308622

IAM 15413, KCTC 12867, JCM 23194

Special Collections

Section

When using BacDive for research please cite our paper

Perexilibacter aurantiacus Shu-F-UV2-2 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from marine sediment.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Flammeovirgaceae*
	Genus	*Perexilibacter*
	Species	**Perexilibacter aurantiacus**
	Full Scientific Name (LPSN)	Perexilibacter aurantiacus Yoon et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32036]	Gram stain	negative

[Ref.: #32036]	Cell length	15 µm

[Ref.: #32036]	Cell width	0.4 µm

[Ref.: #32036]	Cell shape	rod-shaped

[Ref.: #32036]	Motility	yes

[Ref.: #32036]	Flagellum arrangement	gliding

[Ref.: #32036]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #32036]			optimum	33.5 °C
[Ref.: #67770]			growth	30 °C

	pH	Kind of pH		pH
[Ref.: #32036]			optimum	7
[Ref.: #32036]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32036]

Oxygen tolerance

aerobe

[Ref.: #32036]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32036]		NaCl		growth	0-3.5	%
[Ref.: #32036]		NaCl		optimum	1.75	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32036]		5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #32036]		gelatin ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32036]	acid phosphatase	+	3.1.3.2
[Ref.: #32036]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32036]	catalase	+	1.11.1.6
[Ref.: #32036]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32036]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32036]	Sample type/isolated from	marine sediment

[Ref.: #67770]	Sample type/isolated from	Sediment from Carp Island
[Ref.: #67770]	Country	Palau
[Ref.: #67770]	Country ISO 3 Code	PLW
[Ref.: #67770]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB276355 (>99% sequence identity) for Perexilibacter aurantiacus subclade from Microbeatlas

Aquatic Samples	28
Soil Samples	2
Animal Samples	8
Plant Samples
Total Samples	38

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32036]	Perexilibacter aurantiacus gene for 16S rRNA, partial sequence	AB276355	1477	GenBank ENA	406515 tax ID
[Ref.: #124043]	Perexilibacter aurantiacus gene for 16S rRNA, partial sequence, strain: NBRC 104244.	AB682164	1449	GenBank ENA	406515 tax ID	*

[Ref.: #32036]	GC-content	43 mol%
[Ref.: #67770]	GC-content	43 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #32036]

Culture collection no.

MBIC 06993, IAM 15413, KCTC 12867, JCM 23194, NBRC 104244

[Ref.: #91829]

SI-ID 308622

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Perexilibacter aurantiacus gen. nov., sp. nov., a novel member of the family 'Flammeovirgaceae' isolated from sediment.	Yoon J, Ishikawa S, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.64845-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32036

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28286 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91829

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID308622.1 )

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#28286

IJSEM 964 2007 ( DOI 10.1099/ijs.0.64845-0 , PubMed 17473242 )

* These data were automatically processed and therefore are not curated

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